Alternaria brassicae
TaxID: 29911
Basic Information
Alternaria brassicae
Pod Spot of Rape, kålsvartmögel
Alternaria brassicae is a plant pathogen able to infect most Brassica species including important crops such as broccoli, cabbage and oil seed rape. It causes damping off if infection occurs in younger plants and less severe leaf spot symptoms on infections of older plants.
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Dothideomycetes
Pleosporales
Pleosporaceae
Alternaria
brassicae
Undefined
Species
nan
d__Eukaryota;p__Ascomycota;c__Dothideomycetes;o__Pleosporales;f__Pleosporaceae;g__Alternaria;s__Alternaria brassicae
nan
Fungal organisms
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (3 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Angola | Quarantine pests | — |
| Sao Tome and Principe | Quarantine pests | — |
| Seychelles | Quarantine pests | — |
Distribution (116 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Afghanistan | Present | — |
| Angola | Present | — |
| Argentina | Present | — |
| Armenia | Present | — |
| Australia | Present | |
| Austria | Present | — |
| Belgium | Present | — |
| Bangladesh | Present | — |
| Bulgaria | Present | — |
| Belarus | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_004936725.1 | Chromosome | 33 | 2940 | 2988 | - |
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ASM493672v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR20306123 | - | - | - | 26969042 | India | |
|
PRJNA860050 SRX16339579 SRP387018 fungi RNA-Seq of plate-grown A. brassicae Sequencing libraries were prepared using NEBNext Ultra II RNA library prep Kit for Illumina J3 {'host': 'Brassica juncea', 'strain': 'J3', 'lat_lon': '28.75 N 76.966667 E', 'env_medium': 'tissue', 'geo_loc_name': 'India', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_date': '2006-01', 'env_broad_scale': 'anthropogenic terrestrial biome', 'env_local_scale': 'area of developed space with high usage intensity', 'isol_growth_condt': 'custom protocol'} |
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| SRR35172288 | - | - | - | 66353956 | United Kingdom:Harpenden | |
|
PRJNA1311480 SRX30277211 SRP613954 fungi RNAseq of A.brassicae AA1/5, 0 dpi: rep 1 RNA extracted from B.juncea AA1/5, control Brassica napus cv Avatar {'host': 'Brassica napus', 'strain': 'AA1/5', 'isolate': 'MycA_0_1', 'lat_lon': '51.81 N 0.38 W', 'cultivar': 'Brassica napus cv Avatar', 'geo_loc_name': 'United Kingdom:Harpenden', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_date': '1987-07', 'env_broad_scale': 'ENVO:01001305', 'env_local_scale': 'ENVO:01000892'} |
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| SRR35172287 | - | - | - | 35381276 | United Kingdom:Harpenden | |
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PRJNA1311480 SRX30277212 SRP613954 fungi RNAseq of A.brassicae AA1/5, 0 dpi: rep 2 RNA extracted from B.juncea AA1/5, control Brassica napus cv Avatar {'host': 'Brassica napus', 'strain': 'AA1/5', 'isolate': 'MycA_0_2', 'lat_lon': '51.81 N 0.38 W', 'cultivar': 'Brassica napus cv Avatar', 'geo_loc_name': 'United Kingdom:Harpenden', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_date': '1987-07', 'env_broad_scale': 'ENVO:01001305', 'env_local_scale': 'ENVO:01000892'} |
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Literature
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