Phytophthora nicotianae
TaxID: 4792
Basic Information
Phytophthora nicotianae
Black Shank of Tobacco Agent, black shank of tobacco agent
Phytophthora nicotianae or black shank is an oomycete belonging to the order Peronosporales and family Peronosporaceae.
from Wikipedia
Taxonomic Information
Eukaryota
Oomycota
Peronosporomycetes
Peronosporales
Peronosporaceae
Phytophthora
nicotianae
Undefined
Species
k__Eukaryota;p__Oomycota;c__Peronosporomycetes;o__Peronosporales;f__Peronosporaceae;g__Phytophthora;s__Phytophthora nicotianae
Fungal organisms
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (10 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Ananas comosus | Host |
| Annona | Host |
| Cajanus cajan | Host |
| Citrus | Host |
| Mangifera indica | Host |
| Manihot esculenta | Host |
| Nicotiana tabacum | Host |
| Phaseolus vulgaris | Host |
| Solanum melongena | Host |
| Solanum tuberosum | Host |
Quarantine Status (24 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Burkina Faso | Absent | — |
| Switzerland | Regulated non-quarantine pest | 2019 |
| Germany | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Spain | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| United Kingdom | Regulated non-quarantine pest | 2020 |
| Guinea | Regulated non-quarantine pest | 2022 |
| Greece | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Hungary | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Ireland | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Italy | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
Distribution (21 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Australia | Present | — |
| China | Present | — |
| Cook Islands | Present | — |
| Colombia | Present | — |
| Germany | Present | — |
| France | Present | — |
| United Kingdom | Present | — |
| Guyana | Present | — |
| Haiti | Present | — |
| India | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_000509465.1 | Scaffold | 48 | 15 | 16 | - |
|
|
|
Phyt_para_CJ02B3_V1 |
|||||||
Transcriptomes (6 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR32562123 | - | - | - | 22137691 | Not collected | |
|
PRJNA1231262 SRX27871881 SRP567764 general transcriptome of Phytophthora nicotianae transcriptome of Phytophthora nicotianae EG_1 {'host': 'Nicotiana tabacum', 'strain': 'EG_1', 'sample_type': 'tissue', 'collected_by': 'Yahui Yang', 'geo_loc_name': 'Not collected', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2024-11', 'isolation_source': 'Not collected'} |
||||||
| SRR32562122 | - | - | - | 22078347 | Not collected | |
|
PRJNA1231262 SRX27871882 SRP567764 general transcriptome of Phytophthora nicotianae transcriptome of Phytophthora nicotianae EG_2 {'host': 'Nicotiana tabacum', 'strain': 'EG_2', 'sample_type': 'tissue', 'collected_by': 'Yahui Yang', 'geo_loc_name': 'Not collected', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2024-11', 'isolation_source': 'Not collected'} |
||||||
| SRR32562121 | - | - | - | 22058936 | Not collected | |
|
PRJNA1231262 SRX27871883 SRP567764 general transcriptome of Phytophthora nicotianae transcriptome of Phytophthora nicotianae EG_3 {'host': 'Nicotiana tabacum', 'strain': 'EG_3', 'sample_type': 'tissue', 'collected_by': 'Yahui Yang', 'geo_loc_name': 'Not collected', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2024-11', 'isolation_source': 'Not collected'} |
||||||
| SRR15914877 | leaves | - | - | 19974635 | - | |
|
PRJNA755634 SRX12205033 SRP337453 Control15min_Biologicalreplicate2 RNA_Seq data reads obtained through Hi-Seq 13-724 {'host': 'Spathiphyllum sp.', 'strain': '12-1', 'tissue': 'leaves', 'isolate': '13-724', 'lat_lon': '27.6648 N 81.5158 W', 'env_medium': 'Sampled at 15 min', 'geo_loc_name': 'USA: Florida', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.miscellaneous', 'collection_date': '1993-05-01/2014-05-01', 'env_broad_scale': 'Isolated in lab after 15 min mock treated with water', 'env_local_scale': 'Mock treated with water', 'isol_growth_condt': 'grown in V8 media'} |
||||||
| SRR15914874 | leaves | - | - | 20483615 | - | |
|
PRJNA755634 SRX12205036 SRP337453 Control1hr_Biologicalreplicate1 RNA_Seq data reads obtained through Hi-Seq 13-724 {'host': 'Spathiphyllum sp.', 'strain': '12-1', 'tissue': 'leaves', 'isolate': '13-724', 'lat_lon': '27.6648 N 81.5158 W', 'env_medium': 'Sampled at 1 hr', 'geo_loc_name': 'USA: Florida', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.miscellaneous', 'collection_date': '1993-05-01/2014-05-01', 'env_broad_scale': 'Sampled at 1 hr after mock treatment', 'env_local_scale': 'Mock treated with water', 'isol_growth_condt': 'grown in V8 media'} |
||||||
| SRR15914873 | leaves | - | - | 20560685 | - | |
|
PRJNA755634 SRX12205037 SRP337453 Control1hr_Biologicalreplicate2 RNA_Seq data reads obtained through Hi-Seq 13-724 {'host': 'Spathiphyllum sp.', 'strain': '12-1', 'tissue': 'leaves', 'isolate': '13-724', 'lat_lon': '27.6648 N 81.5158 W', 'env_medium': 'Sampled at 1 hr', 'geo_loc_name': 'USA: Florida', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.miscellaneous', 'collection_date': '1993-05-01/2014-05-01', 'env_broad_scale': 'Biological replicate of sample 7', 'env_local_scale': 'Mock treated with water', 'isol_growth_condt': 'grown in V8 media'} |
||||||
Literature
Fetching literature from NCBI PubMed...
Failed to fetch literature