Synchytrium endobioticum
TaxID: 286115
Basic Information
Synchytrium endobioticum
Potato Wart Disease, Wart of Potato
Synchytrium endobioticum is a chytrid fungus that causes the potato wart disease, or black scab. It also infects some other plants of the genus Solanum, though potato is the only cultivated host.
from Wikipedia
Taxonomic Information
Eukaryota
Chytridiomycota
Chytridiomycetes
Synchytriales
Synchytriaceae
Synchytrium
endobioticum
Undefined
Species
nan
d__Eukaryota;p__Chytridiomycota;c__Chytridiomycetes;o__Synchytriales;f__Synchytriaceae;g__Synchytrium;s__Synchytrium endobioticum
nan
Fungal organisms
Photos (4 photos)
Morphological Features
Transmission electron microscopy revealed that the resting spore wall of Synchytrium endobioticum is composed of three distinct layers: an exospore, which appears to be derived from the host potato cell wall; a mesospore; and an endospore, composed of the vesicle wall and the sporangial wall. The exospore could be partially or completely removed by the digestive action of snail gut passage.
Hampson, M. C., Yang, A. F., & Bal, A. K. (1994). Ultrastructure of Synchytrium endobioticum resting spores and enhancement of germination using snails. Mycologia, 86(6), 733-740.
Host Plants (9 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Datura metel | Host |
| Hyoscyamus sp. | Host |
| Lycium sp. | Host |
| Schizanthus sp. | Host |
| Solanum | Host |
| Solanum dulcamara | Host |
| Solanum pseudocapsicum | Host |
| Solanum sp. | Host |
| Solanum tuberosum | Host |
Quarantine Status (96 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Antigua and Barbuda | Quarantine pests | — |
| Albania | Quarantine pests | — |
| Argentina | Absent | 2019 |
| Armenia | Present | — |
| Austria | Present | 2019 |
| Azerbaijan | Absent | 2024 |
| Belgium | Present | 2019 |
| Burkina Faso | Absent | — |
| Bangladesh | Quarantine pests | — |
| Bulgaria | Present | 2019 |
Distribution (63 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Algeria | Absent | — |
| Argentina | Present | — |
| Armenia | Present | — |
| Australia | Present | — |
| Austria | Absent | — |
| Belgium | Absent | — |
| Bulgaria | Present | — |
| Belarus | Present | — |
| Bolivia (Plurinational State of) | Present | — |
| Bhutan | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_001399855.1 | Contig | 2 | 12 | 12 | - |
|
|
|
ASM139985v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| ERR3047567 | - | - | - | 19972804 | - | |
|
PRJEB30662 ERX3121153 ERP113139 fungi Illumina HiSeq 3000 paired end sequencing Potato variety Deodara axillary bud inoculated with Synchytrium endobioticum pathotype 18T1 isolate HLB05-08, 24dpi MB42 (HLB11-11) {'isolate': 'MB42 (HLB11-11)', 'external id': 'SAMEA5209063', 'sample name': 'SeMB42_HLB05-08', 'insdc status': 'public', 'submitter id': 'SeMB42_HLB05-08', 'ena-last-update': '2019-01-10T10:07:44Z', 'scientific_name': 'Synchytrium endobioticum', 'ena-first-public': '2019-03-31T17:02:50Z', 'insdc center name': 'Wageningen University and Research', 'insdc last update': '2019-01-10T10:07:44Z', 'insdc first public': '2019-03-31T17:02:50Z', 'host scientific name': 'Solanum tuberosum'} |
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| ERR3047568 | - | - | - | 61133716 | - | |
|
PRJEB30662 ERX3121154 ERP113139 fungi Illumina HiSeq 3000 paired end sequencing Synchytrium endobioticum resting spores extracted from fresh warts on potato tubers of variety Deodara MB42 {'strain': 'MB42', 'organelle': 'mitochondrion', 'pathotype': '1(D1)', 'external id': 'SAMEA104555372', 'sample name': 'SeMB42', 'insdc status': 'public', 'submitter id': 'SeMB42', 'collection date': '2002', 'ena-last-update': '2018-10-04T10:25:05Z', 'scientific_name': 'Synchytrium endobioticum', 'ena-first-public': '2018-08-30T17:03:49Z', 'insdc center name': 'Wageningen University and Research', 'insdc last update': '2018-10-04T10:25:05Z', 'culture collection': 'NPPO-NL', 'insdc first public': '2018-08-30T17:03:49Z', 'host scientific name': 'Solanum tuberosum L.', 'geographic location (country and/or sea)': 'Netherlands', 'geographic location (region and locality)': 'Brabant'} |
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| ERR3047569 | - | - | - | 51103139 | - | |
|
PRJEB30662 ERX3121155 ERP113139 fungi Illumina HiSeq 3000 paired end sequencing Synchytrium endobioticum resting spores extracted from fresh warts on potato tubers of variety Deodara MB42 {'strain': 'MB42', 'organelle': 'mitochondrion', 'pathotype': '1(D1)', 'external id': 'SAMEA104555372', 'sample name': 'SeMB42', 'insdc status': 'public', 'submitter id': 'SeMB42', 'collection date': '2002', 'ena-last-update': '2018-10-04T10:25:05Z', 'scientific_name': 'Synchytrium endobioticum', 'ena-first-public': '2018-08-30T17:03:49Z', 'insdc center name': 'Wageningen University and Research', 'insdc last update': '2018-10-04T10:25:05Z', 'culture collection': 'NPPO-NL', 'insdc first public': '2018-08-30T17:03:49Z', 'host scientific name': 'Solanum tuberosum L.', 'geographic location (country and/or sea)': 'Netherlands', 'geographic location (region and locality)': 'Brabant'} |
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Literature
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