Carpobrotus edulis

TaxID: 379215

Basic Information

Scientific Name *

Carpobrotus edulis

Common Name

Hottentot Fig, Hottentot fig

Introduction

Carpobrotus edulis is a creeping plant with succulent leaves in the fig-marigold family Aizoaceae, native to South Africa. Its common names include hottentot-fig, sour fig, ice plant, highway ice plant, or vygie.

from Wikipedia

Taxonomic Information

Domain/Kingdom

Eukaryota

Phylum

Streptophyta

Class

Magnoliopsida

Order

Caryophyllales

Family

Aizoaceae

Genus

Carpobrotus

Species

edulis

Subspecies

Unclassified

Photos (5 photos)

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Morphological Features

No morphological description available.

Host Plants (0 host plants)

Data sources: EPPO Global Database and relevant literature.

No host plants available.

Quarantine Status (4 records)

Data sources: IPPC website and national quarantine websites; verified by human review.

Country	Status	Year Added
Egypt	Abesent	2018
Spain	Regulated Invasive Alien Plant	2011
Portugal	Regulated Invasive Alien Plant	1999
French Polynesia	Present	—

Distribution (46 countries)

Data Sources: EPPO Global Database and GBIF.

45

Present

1

Absent

0

Unknown/Other

Country	Status	State
Albania	Present	—
Algeria	Present	—
Argentina	Present	—
Australia	Present
Belgium	Present	—
Bolivia (Plurinational State of)	Present	—
Brazil	Present	—
Switzerland	Present	—
Chile	Present	—
Cyprus	Present	—

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Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Download CSV

Genomes (1 records)

Data source: NCBI.

Assembly Accession	Assembly Level	Genome Size(Mb)	Contig N50(Kb)	Scaffold N50(Kb)	BUSCO%	Downloads	Actions
GCA_965782825.1	Scaffold	955	211	94201	-	FASTA
Assembly Name dcCarEdul1.hap2.1

Transcriptomes (3 records)

Data source: NCBI.

Run ID	Tissue	Developmental Stage	Sex	Read Count	Location	Actions
SRR10799660	pollen	flowering/reproductive maturity/anther dehiscence	-	58929617	USA: California	Download NCBI
BioProject PRJNA589022 Experiment ID SRX7473555 Study ID SRP238960 Category weed Title RNA-Seq of Carpobrotus edulis: pollen Design Description The total RNA-Seq library was created by the Genomics Research Core (GRC) at the University of Pittsburgh (Pittsburgh, PA). The GRC performed TruSeq stranded total RNA library preparation using an Illumina RiboZero Plant Leaf Kit. Strain Bodega Marine Lab, Bodega Bay, CA population Sample Attributes {'age': 'not collected', 'temp': '49F', 'tissue': 'pollen', 'isolate': 'Bodega Marine Lab, Bodega Bay, CA population', 'lat_lon': '38.3178 N 123.0703 W', 'cell_type': 'vegetative/reproductive plant cells', 'dev_stage': 'flowering/reproductive maturity/anther dehiscence', 'treatment': 'the 30 - 50 mg collected pollen was stored at -80C until total RNA extraction', 'sample_type': 'tissue', 'collected_by': 'Dr. Tia-Lynn Ashman (University of Pittsburgh) and Dr. Jessica D. Stephens', 'geo_loc_name': 'USA: California', 'biosamplemodel': 'Plant', 'collection_date': '2018-03-04', 'isolation_source': 'Northern California coastal region dominated by dunes, coastal scrub, and grassland vegetation'}
ERR15315142	-	-	hermaphrodite and monoecious	31176431	-	Download NCBI
BioProject PRJEB93977 Experiment ID ERX14721988 Study ID ERP176857 Category weed Title Illumina NovaSeq 6000 paired end sequencing Design Description Illumina sequencing of sample accession SAMEA110451418 for study accession PRJEB93977. This submission includes reads tagged with the sequence CGCCTTGA. Sample Attributes {'gal': 'Royal Botanic Gardens Kew', 'sex': 'hermaphrodite and monoecious', 'tolid': 'dcCarEdul1', 'habitat': 'sea cliff', 'elevation': '30', 'lifestage': 'vegetative structure', 'broker name': 'COPO', 'external id': 'SAMEA110451418', 'sample name': '62c6ff4986eb2e0eb5ebf516', 'specimen_id': 'KDTOL10546', 'collected_by': 'Maarten Christenhusz', 'insdc status': 'public', 'project name': 'DTOL', 'submitter id': '62c6ff4986eb2e0eb5ebf516', 'gal_sample_id': 'KDTOL10546', 'identified_by': 'Maarten Christenhusz', 'organism part': 'LEAF', 'collection date': '2022-06-15', 'ena-last-update': '2022-08-01T16:48:21Z', 'scientific_name': 'Carpobrotus edulis', 'barcoding center': 'ROYAL BOTANIC GARDEN EDINBURGH', 'ena-first-public': '2022-08-01T16:48:21Z', 'specimen_voucher': 'K001400982', 'insdc center name': 'EarlhamInstitute', 'insdc last update': '2022-08-01T16:48:21Z', 'insdc first public': '2022-08-01T16:48:21Z', 'sample derived from': 'SAMEA110450299', 'collecting institution': 'Independent', 'identifier_affiliation': 'Independent', 'original collection date': '2022-06-15', 'original collection location': 'United Kingdom \| Cornwall \| Lizard Point', 'geographic location (latitude)': '49.959', 'geographic location (longitude)': '-5.206', 'geographic location (country and/or sea)': 'United Kingdom', 'geographic location (region and locality)': 'Cornwall \| Lizard Point'}
ERR15315144	-	-	hermaphrodite and monoecious	31550786	-	Download NCBI
BioProject PRJEB93977 Experiment ID ERX14721990 Study ID ERP176857 Category weed Title Illumina NovaSeq X paired end sequencing Design Description Illumina sequencing of sample accession SAMEA110451418 for study accession PRJEB93977. This submission includes reads tagged with the sequence CGCGATAG. Sample Attributes {'gal': 'Royal Botanic Gardens Kew', 'sex': 'hermaphrodite and monoecious', 'tolid': 'dcCarEdul1', 'habitat': 'sea cliff', 'elevation': '30', 'lifestage': 'vegetative structure', 'broker name': 'COPO', 'external id': 'SAMEA110451418', 'sample name': '62c6ff4986eb2e0eb5ebf516', 'specimen_id': 'KDTOL10546', 'collected_by': 'Maarten Christenhusz', 'insdc status': 'public', 'project name': 'DTOL', 'submitter id': '62c6ff4986eb2e0eb5ebf516', 'gal_sample_id': 'KDTOL10546', 'identified_by': 'Maarten Christenhusz', 'organism part': 'LEAF', 'collection date': '2022-06-15', 'ena-last-update': '2022-08-01T16:48:21Z', 'scientific_name': 'Carpobrotus edulis', 'barcoding center': 'ROYAL BOTANIC GARDEN EDINBURGH', 'ena-first-public': '2022-08-01T16:48:21Z', 'specimen_voucher': 'K001400982', 'insdc center name': 'EarlhamInstitute', 'insdc last update': '2022-08-01T16:48:21Z', 'insdc first public': '2022-08-01T16:48:21Z', 'sample derived from': 'SAMEA110450299', 'collecting institution': 'Independent', 'identifier_affiliation': 'Independent', 'original collection date': '2022-06-15', 'original collection location': 'United Kingdom \| Cornwall \| Lizard Point', 'geographic location (latitude)': '49.959', 'geographic location (longitude)': '-5.206', 'geographic location (country and/or sea)': 'United Kingdom', 'geographic location (region and locality)': 'Cornwall \| Lizard Point'}

DNA Barcodes (5 records)

View all

Data source: BOLD.

Process ID	BIN	Marker	Length	Country	Date	Lat/Lon	Sequence
SAFH2063-11	-	rbcLa	552	South Africa	2010-06-09	-26.16444, 27.97667	AGTGTT---GGATTTAAAGCTGGTGTTAAAGATTACAAATTGACTTATTATACTCCTGACTATCAACCCCAGGATACTGATATCTTGGCAGCATTCCGAGTATCTCCCCAACCTGGAGTTCCATCAGAAGAAGCAGGGGCCGCAGTAGCTGCCGAATCTTCGACTGGTACATGGACAACTGTATGGACTGACGGACTTACCAGTCTTGATCGTTACAAAGGACGATGCTACCACATCGATCCCGTTCCTGGAGAAGACAATCAATATATTTGTTATGTAGCTTACCCCTTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGTATTTGGGTTCAAAGCCCTGCGTGCTCTACGTTTGGAGGATTTACGAATCCCTATTGCTTATGTAAAAACTTTCCAAGGACCGCCTCACGGTATCCAGGTTGAGAGAGATAAATTGAACAAGTATGGTCGCCCCCTATTGGGATGCACTATTAAACCGAAATTGGGGTTATCTGCTAAAAACTATGGTCGAGCAGTTTATGAATGTCTT
GBVP1947-14	-	rbcL	1323	-	-	-	GTTGGATTTAAAGCTGGTGTTAAAGATTAC------------AAATTGACTTATTATACT---CCTGACTATCAACCCCAGGATACTGATATCTTGGCAGCATTCCGAGTATCTCCCCAACCTGGAGTTCCATCAGAAGAAGCAGGGGCCGCAGTAGCTGCCGAATCTTCG---ACTGGTACATGGACA---ACTGTATGGACTGACGGA---CTTACCAGTCTTGATCGTTACAAAGGACGATGCTACCACATCGATCCCGTTCCTGGAGAAGAC---AATCAATATATTTGTTATGTAGCTTACCCCTTAGACCTTTTTGAAGAA---GGTTCTGTT---ACTAACATGTTTACT---TCCATTGTGGGTAATGTATTT---GGGTTCAAAGCCCTGCGT---GCTCTACGTTTG---GAGGATTTACGA---ATCCCTATTGCTTATGTAAAAACT---TTCCAAGGACCG---CCTCACGGTATC---CAGGTTGAGAGAGAT---------AAA------TTGAAC---------------AAG---TAT---GGTCGCCCCCTATTGGGATGCACTATT---AAACCGAAA---TTGGGGTTA---TCT---GCTAAAAACTATGGT---CGAGCA---GTTTATGAATGTCTTCGCGGTGGACTTGACTTTACCAAAGAT------------------------GAT---------------------GAAAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTC---TTA---TTT------------------------------------------------------------TGTGCCGAAGCA---ATTTATAAAGCACAGGCCGAA---ACAGGT---GAAATCAAAGGGCATTACTTGAATGCTACCGCGGGTACA---TGCGAAGAAATGATAAAAAGGGCTGTATTT---GCC---AGAGAATTG------GGAGTTCCTATCGTAATGCATGACTACTTAACA------GGGGGATTCACT------------GCAAATACTAGCTTGTCTCATTATTGCCGAGAT---AAC------GGTTTACTTCTT---CACATC---CACCGTGCAATGCACGCAGTTATT------------GAT------AGACAAAAGAATCATGGTATGCACTTCCGTGTACTAGCTAAAGCGTTA---CGTCTGTCTGGCGGAGATCATATCCATGCCGGTACCGTAGTA---GGTAAGCTTGAA------GGGGAAAGAGATATCACTTTAGGCTTTGTTGATTTATTACGTGATGATCATACTGAAATAGAC---GCAACTCGCGGTATTTATTTC------ACTCAATCTTGG---GTTTCCACACCA---GGTGTT---CTGCCCGTTGCTTCAGGCGGTATTCACGTTTGG---------------CACATG------CCCGCCCTA---ACCGAGATCTTTGGTGAT---GATTCTGTACTACAGTTCGGTGGAGGAACTTTAGGACACCCTTGGGGAAATGCACCGGGTGCTGTAGCGAATCGAGTAGCTCTAGAAGCATGCGTACAAGCTCGTAATGAGGGGCGTGATCTTGCT------ACT---GAA------GGTGCTACAATTATTCGCGAGGCTTGCAAATGG---------------------------------------------------------------------------------------
GBVE3677-11	-	rbcL	1389	-	-	-	GTTGGATTTAAAGCTGGTGTTAAAGATTAC------------AAATTGACTTATTATACT---CCTGACTATCAACCCCAGGATACTGATATCTTGGCAGCATTCCGAGTATCTCCCCAACCTGGAGTTCCATCAGAAGAAGCAGGGGCCGCAGTAGCTGCCGAATCTTCG---ACTGGTACATGGACA---ACTGTATGGACTGACGGA---CTTACCAGTCTTGATCGTTACAAAGGACGATGCTACCACATCGATCCCGTTCCTGGAGAAGAC---AATCAATATATTTGTTATGTAGCTTACCCCTTAGACCTTTTTGAAGAA---GGTTCTGTT---ACTAACATGTTTACT---TCCATTGTGGGTAATGTATTT---GGGTTCAAAGCCCTGCGT---GCTCTACGTTTG---GAGGATTTACGA---ATCCCTATTGCTTATGTAAAAACT---TTCCAAGGACCG---CCTCACGGTATC---CAGGTTGAGAGAGAT---------AAA------TTGAAC---------------AAG---TAT---GGTCGCCCCCTATTGGGATGCACTATT---AAACCGAAA---TTGGGGTTA---TCT---GCTAAAAACTATGGT---CGAGCA---GTTTATGAATGTCTTCGCGGTGGACTTGACTTTACCAAAGAT------------------------GAT---------------------GAAAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTC---TTA---TTT------------------------------------------------------------TGTGCCGAAGCA---ATTTATAAAGCACAGGCCGAA---ACAGGT---GAAATCAAAGGGCATTACTTGAATGCTACCGCGGGTACA---TGCGAAGAAATGATAAAAAGGGCTGTATTT---GCC---AGAGAATTG------GGAGTTCCTATCGTAATGCATGACTACTTAACA------GGGGGATTCACT------------GCAAATACTAGCTTGTCTCATTATTGCCGAGAT---AAC------GGTTTACTTCTT---CACATC---CACCGTGCAATGCACGCAGTTATT------------GAT------AGACAAAAGAATCATGGTATGCACTTCCGTGTACTAGCTAAAGCGTTA---CGTCTGTCTGGCGGAGATCATATCCATGCCGGTACCGTAGTA---GGTAAGCTTGAA------GGGGAAAGAGATATCACTTTAGGCTTTGTTGATTTATTACGTGATGATCATACTGAAATAGAC---GCAACTCGCGGTATTTATTTC------ACTCAATCTTGG---GTTTCCACACCA---GGTGTT---CTGCCCGTTGCTTCAGGCGGTATTCACGTTTGG---------------CACATG------CCCGCCCTA---ACCGAGATCTTTGGTGAT---GATTCTGTACTACAGTTCGGTGGAGGAACTTTAGGACACCCTTGGGGAAATGCACCGGGTGCTGTAGCGAATCGAGTAGCTCTAGAAGCATGCGTACAAGCTCGTAATGAGGGGCGTGATCTTGCT------ACT---GAA------GGTGCTACAATTATTCGCGAGGCTTGCAAATGGAGT------CCTGAACTAGCGGCT---GCTTGT------GAG---GTCTGGAAAGAAATCAAATTTGAA---TTCCCAGCAGTGGAT
GBVE3676-11	-	rbcL	720	Portugal	-	39.675292999999996, -7.9336624	---------------GGTGTTAAAGATTAC------------AAATTGACTTATTATACT---CCTGACTATCAACCCCAGGATACTGATATCTTGGCAGCATTCCGAGTATCTCCCCAACCTGGAGTTCCATCAGAAGAAGCAGGGGCCGCAGTAGCTGCCGAATCTTCG---ACTGGTACATGGACA---ACTGTATGGACTGACGGA---CTTACCAGTCTTGATCGTTACAAAGGACGATGCTACCACATCGATCCCGTTCCTGGAGAAGAC---AATCAATATATTTGTTATGTAGCTTACCCCTTAGACCTTTTTGAAGAA---GGTTCTGTT---ACTAACATGTTTACT---TCCATTGTGGGTAATGTATTT---GGGTTCAAAGCCCTGCGT---GCTCTACGTTTG---GAGGATTTACGA---ATCCCTATTGCTTATGTAAAAACT---TTCCAAGGACCG---CCTCACGGTATC---CAGGTTGAGAGAGAT---------AAA------TTGAAC---------------AAG---TAT---GGTCGCCCCCTATTGGGATGCACTATT---AAACCGAAA---TTGGGGTTA---TCT---GCTAAAAACTATGGT---CGAGCA---GTTTATGAATGTCTTCGCGGTGGACTTGACTTTACCAAAGAT------------------------GAT---------------------GAAAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTC---TTA---TTT------------------------------------------------------------TGTGCCGAAGCA---ATTTATAAAGCACAGGCCGAA---ACAGGT---GAAATCAAAGGGCATTACTTGAATGCTACCGCGGGTACA---TGCGAAGAAATGAGAAAAAGGGCTGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
EDTOL1019-22	-	rbcL	607	United Kingdom	2022-06-15	49.959, -5.206	-AAGTGTTGGATTTAAAGCTGGTGTTAAAGATTACAAATTGACTTATTATACTCCTGACTATCAACCCCAGGATACTGATATCTTGGCAGCATTCCGAGTATCTCCCCAACCTGGAGTTCCATCAGAAGAAGCAGGGGCCGCAGTAGCTGCCGAATCTTCGACTGGTACATGGACAACTGTATGGACTGACGGACTTACCAGTCTTGATCGTTACAAAGGACGATGCTACCACATCGATCCCGTTCCTGGAGAAGACAATCAATATATTTGTTATGTAGCTTACCCCTTAGACCTTTTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGTATTTGGGTTCAAAGCCCTGCGTGCTCTACGTTTGGAGGATTTACGAATCCCTATTGCTTATGTAAAAACTTTCCAAGGACCGCCTCACGGTATCCAGGTTGAGAGAGATAAATTGAACAAGTATGGTCGCCCCCTATTGGGATGCACTATTAAACCGAAATTGGGGTTATCTGCTAAAAACTATGGTCGAGCAGTTTATGAATGTCTTCGCGGTGGACTTGACTTTACCAAAGATGATGAAAATGTGAACTCCCAACCATTT

Carpobrotus edulis

Basic Information

Taxonomic Information

Photos (5 photos)

Morphological Features

Host Plants (0 host plants)

Quarantine Status (4 records)

Distribution (46 countries)

Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Genomes (1 records)

Transcriptomes (3 records)

DNA Barcodes (5 records)

Literature

State Information