Herbaspirillum rubrisubalbicans
TaxID: 80842
Basic Information
Herbaspirillum rubrisubalbicans
Mottled Stripe Disease
Herbaspirillum rubrisubalbicans is a nitrogen-fixing bacterium of the genus Herbaspirillum found in roots and stems of sugarcane (Saccharum officinarum), sorghum (Sorghum bicolor), and rice (Oryza sativa). H. rubrisubalbicans can cause symptoms of the mottled stripe disease in sugarcane and sorghum. Leaves inoculated with H. rubrisubalbicans show red stripes along the secondary veins of the leaf blade.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Betaproteobacteria
Burkholderiales
Oxalobacteraceae
Herbaspirillum
rubrisubalbicans
Unclassified
Species
nan
d__Bacteria;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Oxalobacteraceae;g__Herbaspirillum;s__Herbaspirillum rubrisubalbicans
nan
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (6 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_003719195.1 | Complete Genome | 5 | 5617 | 5617 | - |
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ASM371919v1 |
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| GCF_003263475.1 | Contig | 5 | 192 | 192 | - |
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ASM326347v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| ERR867999,ERR868002 | - | - | - | 440911 | - | |
|
PRJEB9235 ERX947601 ERP010320 bacteria Illumina MiSeq paired end sequencing; Transcriptome profiling of Herbaspirillum rubrisubalbicans M1 during sorghum root colonization Transcriptome profiling of Herbaspirillum rubrisubalbicans M1 during sorghum root colonization {'broker name': 'ArrayExpress', 'external id': 'SAMEA3367588', 'sample name': 'E-MTAB-3538:Control', 'insdc status': 'public', 'submitter id': 'E-MTAB-3538:Control', 'ena last update': '2015-04-30', 'ena first public': '2015-08-13', 'growth condition': 'Free-living cells', 'insdc center name': 'UFPR', 'insdc last update': '2015-04-30T09:56:40Z', 'insdc center alias': 'UFPR', 'insdc first public': '2015-08-13T17:01:07Z'} |
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| ERR867996,ERR867997 | - | - | - | 5858959 | - | |
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PRJEB9235 ERX947602 ERP010320 bacteria Illumina MiSeq paired end sequencing; Transcriptome profiling of Herbaspirillum rubrisubalbicans M1 during sorghum root colonization Transcriptome profiling of Herbaspirillum rubrisubalbicans M1 during sorghum root colonization {'broker name': 'ArrayExpress', 'external id': 'SAMEA3367589', 'sample name': 'E-MTAB-3538:Epiphytic2', 'insdc status': 'public', 'submitter id': 'E-MTAB-3538:Epiphytic2', 'ena last update': '2015-04-30', 'ena first public': '2015-08-13', 'growth condition': 'Sorghum root epiphytic cells', 'insdc center name': 'UFPR', 'insdc last update': '2015-04-30T09:56:40Z', 'insdc center alias': 'UFPR', 'insdc first public': '2015-08-13T17:01:07Z'} |
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| ERR868001 | - | - | - | 5469008 | - | |
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PRJEB9235 ERX947603 ERP010320 bacteria Illumina MiSeq paired end sequencing; Transcriptome profiling of Herbaspirillum rubrisubalbicans M1 during sorghum root colonization Transcriptome profiling of Herbaspirillum rubrisubalbicans M1 during sorghum root colonization {'broker name': 'ArrayExpress', 'external id': 'SAMEA3367590', 'sample name': 'E-MTAB-3538:Control2', 'insdc status': 'public', 'submitter id': 'E-MTAB-3538:Control2', 'ena last update': '2015-04-30', 'ena first public': '2015-08-13', 'growth condition': 'Free-living cells', 'insdc center name': 'UFPR', 'insdc last update': '2015-04-30T09:56:40Z', 'insdc center alias': 'UFPR', 'insdc first public': '2015-08-13T17:01:07Z'} |
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Literature
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