Cercospora sojina
TaxID: 438356
Basic Information
Cercospora sojina
Leaf Spot of Soybean
Cercospora sojina is a fungal plant pathogen which causes frogeye leaf spot of soybeans. Frog eye leaf spot is a major disease on soybeans in the southern U.S. and has recently started to expand into the northern U.S. where soybeans are grown. The disease is also found in other soybean production areas of the world.
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Dothideomycetes
Mycosphaerellales
Mycosphaerellaceae
Cercospora
sojina
nan
Species
nan
k__Eukaryota;p__Ascomycota;c__Dothideomycetes;o__Mycosphaerellales;f__Mycosphaerellaceae;g__Cercospora;s__Cercospora sojina
nan
Fungal organisms
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (3 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (9 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Argentina | Present | — |
| China | Present | — |
| Colombia | Present | — |
| Guatemala | Present | — |
| India | Present | — |
| Republic of Korea | Present | — |
| United States of America | Present | — |
| Venezuela (Bolivarian Republic of) | Present | — |
| Zimbabwe | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_002150695.1 | Scaffold | 15 | 100 | 119 | - |
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ASM215069v1 |
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Transcriptomes (2 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR7504228 | - | - | - | 628010 | USA: Arkansas | |
|
PRJNA476923 SRX4373588 SRP151362 fungi RNA-seq of Cercospora sojina: Wild-type in vitro Tissue was collected, frozen in liquid nitrogen, and ground in a pre-chilled mortar and pestle containing sterile glass beads (0.5mm) (Research Products International). Total RNA was isolated with a Direct-zol RNA MiniPrep Kit (Zymo Research, Irvine, CA, USA) following the manufacturers recommendations. DNA quality and quantity were determined by agarose gel electrophoresis and a NanoDrop ND-1000 Spectrophotometer (Thermo Fisher Scientific). The library was sequenced with a 316 Chip Kit v2 (Thermo Fisher Scientific) 2.2.3 {'host': 'Glycine max', 'isolate': '2.2.3', 'env_material': 'Leaf', 'geo_loc_name': 'USA: Arkansas', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.host-associated'} |
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| SRR7504227 | - | - | - | 1578634 | USA: Arkansas | |
|
PRJNA476923 SRX4373589 SRP151362 fungi RNA-seq of Cercospora sojina: Wild-type in vitro Tissue was collected, frozen in liquid nitrogen, and ground in a pre-chilled mortar and pestle containing sterile glass beads (0.5mm) (Research Products International). Total RNA was isolated with a Direct-zol RNA MiniPrep Kit (Zymo Research, Irvine, CA, USA) following the manufacturers recommendations. DNA quality and quantity were determined by agarose gel electrophoresis and a NanoDrop ND-1000 Spectrophotometer (Thermo Fisher Scientific). The library was sequenced with a 318 Chip Kit v2 (Thermo Fisher Scientific) 2.2.3 {'host': 'Glycine max', 'isolate': '2.2.3', 'env_material': 'Leaf', 'geo_loc_name': 'USA: Arkansas', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.host-associated'} |
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DNA Barcodes (19 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| GBCAP2072-13 | - | ITS | 483 | South Korea | - | 36.402386, 127.762245 | |
| GBCAP2071-13 | - | ITS | 580 | Argentina | - | -35.69727, -64.53239 | |
| GBCAP2070-13 | - | ITS | 483 | South Korea | - | 36.402386, 127.762245 | |
| GBCAP2069-13 | - | ITS | 580 | Argentina | - | -35.69727, -64.53239 | |
| GBCAP2068-13 | - | ITS | 580 | Argentina | - | -35.69727, -64.53239 | |
| GBCAP2067-13 | - | ITS | 580 | Argentina | - | -35.69727, -64.53239 | |
| GBCAP2066-13 | - | ITS | 580 | Argentina | - | -35.69727, -64.53239 | |
| GBCAP2065-13 | - | ITS | 580 | Argentina | - | -35.69727, -64.53239 | |
| GBCAP2064-13 | - | ITS | 580 | - | - | - | |
| GBCAP2063-13 | - | ITS | 559 | Argentina | - | -35.69727, -64.53239 |
Literature
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