Pseudomonas asplenii
TaxID: 53407
Basic Information
Pseudomonas asplenii
Bacterial Leaf Blight of Bird's Nest Fern
Pseudomonas asplenii is a Gram-negative soil bacterium that causes bacterial leaf blight of the bird's-nest fern (Asplenium nidus), from which it derives its name.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
asplenii
Unclassified
Species
nan
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas asplenii
nan
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (13 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Argentina | Absent | — |
| Burundi | Quarantine pests | — |
| Burkina Faso | Absent | — |
| Cuba | Absent | — |
| Egypt | Abesent | — |
| India | Quarantine pests | — |
| Sri Lanka | Quarantine pests | — |
| Myanmar | Quarantine pests | — |
| New Caledonia | Quarantine pests | — |
| Peru | Absent | — |
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_026016305.1 | Complete Genome | 6 | 6426 | 6426 | - |
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ASM2601630v1 |
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| GCF_001293465.1 | Scaffold | 7 | 172 | 355 | - |
|
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ASM129346v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR36234901 | - | - | - | 10100088 | - | |
|
PRJNA1370452 SRX31270306 SRP649875 0736RSAMD_3 Total RNA was isolated from liquid cultures of Pseudomonas fuscovaginae UPB0736 and three mutant derivatives. All samples were provided to Novogene for library preparation and sequencing. Following quality control and rRNA depletion, a stranded cDNA library was generated and sequenced using Illumina NovaSeq X Plus with PE150 configuration. UPB0736 {'strain': 'UPB0736', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_date': '2024-11-03', 'isol_growth_condt': "Cultured in King's B Medium at 30°C"} |
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| SRR36234900 | - | - | - | 11223128 | - | |
|
PRJNA1370452 SRX31270307 SRP649875 0736RSAMD_4 Total RNA was isolated from liquid cultures of Pseudomonas fuscovaginae UPB0736 and three mutant derivatives. All samples were provided to Novogene for library preparation and sequencing. Following quality control and rRNA depletion, a stranded cDNA library was generated and sequenced using Illumina NovaSeq X Plus with PE150 configuration. UPB0736 {'strain': 'UPB0736', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_date': '2024-11-04', 'isol_growth_condt': "Cultured in King's B Medium at 30°C"} |
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| SRR36234899 | - | - | - | 15956150 | - | |
|
PRJNA1370452 SRX31270308 SRP649875 0736RSAMD_5 Total RNA was isolated from liquid cultures of Pseudomonas fuscovaginae UPB0736 and three mutant derivatives. All samples were provided to Novogene for library preparation and sequencing. Following quality control and rRNA depletion, a stranded cDNA library was generated and sequenced using Illumina NovaSeq X Plus with PE150 configuration. UPB0736 {'strain': 'UPB0736', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_date': '2024-11-05', 'isol_growth_condt': "Cultured in King's B Medium at 30°C"} |
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Literature
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