Oryza barthii
TaxID: 65489
Basic Information
Oryza barthii
African wild rice, Wild Rice, wild rice
Oryza barthii, also called Barth's rice, wild rice, or African wild rice, is a grass in the rice genus Oryza. It is an annual, erect to semierect grass. It has leaves with a short ligule (<13 millimetres (33?64 in)), and panicles that are compact to open, rarely having secondary branching. The inflorescence structure are large spikelets, 7.7 C12.3 millimetres (39?128 C31?64 in) long and 2.3 C3.5 millimetres (23?256 C35?256 in) wide, with strong awns (up to 20 centimetres (8 in) long), usually red. The inflorescences have anthers 1.5 C3 millimetres (15?256 C15?128 in) long. This wild rice grows in sub-Saharan Africa, and is found in mopane or savanna woodland, savanna or fadama. O. barthii grows in deep water, seasonally flooded land, stagnant water, and slowly flowing water or pools; it prefers clay or black cotton soils (vertisol), and is found in open habitats. It is the progenitor of cultivated Oryza glaberrima, African rice. It has nodal roots hosting nitrogen fixing, photosynthetic strains of Bradyrhizobium. The sequenced genome of O. barthii was published in 2014. This species is one of the AA species, the domesticated rices and their wild relatives.
from Wikipedia
Taxonomic Information
Eukaryota
Streptophyta
Magnoliopsida
Poales
Poaceae
Oryza
barthii
nan
Species
nan
k__Eukaryota;p__Streptophyta;c__Magnoliopsida;o__Poales;f__Poaceae;g__Oryza;s__Oryza barthii
nan
Weeds
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (2 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (31 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Angola | Present | — |
| Algeria | Present | — |
| Benin | Present | — |
| Burkina Faso | Present | — |
| Botswana | Present | — |
| Central African Republic | Present | — |
| Côte d'Ivoire | Present | — |
| Cameroon | Present | — |
| Democratic Republic of the Congo | Present | — |
| Ethiopia | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_000182155.4 | Chromosome | 347 | 14688 | 14688 | - |
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ObarRS3 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR7445560 | Leaf sheaths | Tillering stage | - | 18016366 | Sierra Leone | |
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PRJNA478144 SRX4316116 SRP151515 weed Oryza barthii; Leaf sheaths RANDOM W1411 {'tissue': 'Leaf sheaths', 'cultivar': 'W1411', 'dev_stage': 'Tillering stage', 'geo_loc_name': 'Sierra Leone', 'biosamplemodel': 'Plant'} |
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| SRR7445558 | Leaf blaseds | Tillering stage | - | 19263889 | Sierra Leone | |
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PRJNA478144 SRX4316118 SRP151515 weed Oryza barthii; Leaf blaseds RANDOM W1411 {'tissue': 'Leaf blaseds', 'cultivar': 'W1411', 'dev_stage': 'Tillering stage', 'geo_loc_name': 'Sierra Leone', 'biosamplemodel': 'Plant'} |
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| SRR14132832 | leaf | mature | - | 44760900 | China: Zhejiang | |
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PRJNA719249 SRX10502779 SRP313180 weed lncRNA-seq of Oryza barthii: mature leaf lncRNA-seq of leaves from Oryza barthii {'age': 'mature', 'tissue': 'leaf', 'ecotype': 'wild type', 'isolate': 'lncRNA', 'cultivar': 'NA', 'dev_stage': 'mature', 'geo_loc_name': 'China: Zhejiang', 'biosamplemodel': 'Plant'} |
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DNA Barcodes (2 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| ITSAD4732-14 | - | ITS2 | 229 | Cameroon | - | 6.2941685, 12.948474 | |
| GBVD4225-11 | - | matK | 1558 | - | - | - |
Literature
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