Fusarium circinatum
TaxID: 48490
Basic Information
Fusarium circinatum
Pitch Canker of Pine, Pitch canker
Fusarium circinatum is a fungal plant pathogen that causes the serious disease pitch canker on pine trees and Douglas firs (Pseudotsuga menziesii). The most common hosts of the pathogen include slash pine (Pinus elliottii), loblolly pine (Pinus taeda), Monterey pine (Pinus radiata), Mexican weeping pine (Pinus patula), and Douglas fir. Like other Fusarium species in the phylum Ascomycota, it is the asexual reproductive state of the fungus and has a teleomorph, Gibberella circinata.
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Sordariomycetes
Hypocreales
Nectriaceae
Fusarium
circinatum
Undefined
Species
nan
d__Eukaryota;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Nectriaceae;g__Fusarium;s__Fusarium circinatum
nan
Fungal organisms
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (64 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Abies alba | Host |
| Briza maxima | Host |
| Bromus carinatus | Host |
| Calocedrus decurrens | Host |
| Centaurea decipiens | Host |
| Cymbidium sp. | Host |
| Drypetes natalensis | Host |
| Drypetes natalensis var. leiogyna | Host |
| Ehrharta erecta | Host |
| Holcus lanatus | Host |
Quarantine Status (49 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Argentina | Absent | 2019 |
| Australia | Quarantine pests | — |
| Austria | Present | 2019 |
| Belgium | Present | 2019 |
| Bulgaria | Quarantine pest ((EU) 2019/2072 Annex II B) | 2019 |
| Brazil | A1 list | 2018 |
| Switzerland | A1 list | 2019 |
| Chile | A2 list | 2019 |
| China | Quarantine pests | 2021 |
| Cyprus | Quarantine pest ((EU) 2019/2072 Annex II B) | 2019 |
Distribution (53 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Algeria | Absent | — |
| Australia | Absent | — |
| Austria | Absent | — |
| Belgium | Absent | — |
| Bolivia (Plurinational State of) | Present | — |
| Brazil | Absent | |
| Switzerland | Absent | — |
| Chile | Present | — |
| Democratic Republic of the Congo | Present | — |
| Colombia | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_000497325.4 | Chromosome | 45 | 2632 | 4313 | - |
|
|
|
ASM49732v4 |
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Transcriptomes (6 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR27309940 | - | - | - | 22397279 | Not applicable | |
|
PRJNA1051661 SRX22987208 SRP479371 fungi RNAseq of Fusarium circinatum treated with dsRNA Replicate 2 Total RNA extraction and Truseq stranded mRNA library kit Pinus radiata seedlings 4 days post inoculation {'host': 'Pinus radiata', 'strain': 'Fc072v', 'isolate': 'Pinus radiata seedlings 4 days post inoculation', 'treatment': 'dsRNA-treated Replicate 2', 'sample_type': 'Tissue sample', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': 'Not collected', 'host_tissue_sampled': 'Xylem-phloem'} |
||||||
| SRR27309939 | - | - | - | 23476362 | Not applicable | |
|
PRJNA1051661 SRX22987209 SRP479371 fungi RNAseq of Fusarium circinatum treated with dsRNA Replicate 3 Total RNA extraction and Truseq stranded mRNA library kit Pinus radiata seedlings 4 days post inoculation {'host': 'Pinus radiata', 'strain': 'Fc072v', 'isolate': 'Pinus radiata seedlings 4 days post inoculation', 'treatment': 'dsRNA-treated Replicate 3', 'sample_type': 'Tissue sample', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': 'Not collected', 'host_tissue_sampled': 'Xylem-phloem'} |
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| SRR27309938 | - | - | - | - | Not applicable | |
|
PRJNA1051661 SRX22987210 SRP479371 fungi RNAseq of Fusarium circinatum treated with dsRNA Replicate 4 Total RNA extraction and Truseq stranded mRNA library kit Pinus radiata seedlings 4 days post inoculation {'host': 'Pinus radiata', 'strain': 'Fc072v', 'isolate': 'Pinus radiata seedlings 4 days post inoculation', 'treatment': 'dsRNA-treated Replicate 4', 'sample_type': 'Tissue sample', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': 'Not collected', 'host_tissue_sampled': 'Xylem-phloem'} |
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| SRR27309944 | - | - | - | 25239119 | - | |
|
PRJNA1051661 SRX22987204 SRP479371 RNAseq of Fusarium circinatum not treated with dsRNA Replicate 2 Total RNA extraction and Truseq stranded mRNA library kit Pinus radiata seedlings 4 days post inoculation {'host': 'Pinus radiata', 'strain': 'Fc072v', 'isolate': 'Pinus radiata seedlings 4 days post inoculation', 'treatment': 'Non-treated Replicate 2', 'sample_type': 'Tissue sample', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': 'Not collected', 'host_tissue_sampled': 'Xylem-phloem'} |
||||||
| SRR27309943 | - | - | - | 22306849 | - | |
|
PRJNA1051661 SRX22987205 SRP479371 RNAseq of Fusarium circinatum not treated with dsRNA Replicate 3 Total RNA extraction and Truseq stranded mRNA library kit Pinus radiata seedlings 4 days post inoculation {'host': 'Pinus radiata', 'strain': 'Fc072v', 'isolate': 'Pinus radiata seedlings 4 days post inoculation', 'treatment': 'Non-treated Replicate 3', 'sample_type': 'Tissue sample', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': 'Not collected', 'host_tissue_sampled': 'Xylem-phloem'} |
||||||
| SRR27309942 | - | - | - | 24301393 | - | |
|
PRJNA1051661 SRX22987206 SRP479371 RNAseq of Fusarium circinatum not treated with dsRNA Replicate 4 Total RNA extraction and Truseq stranded mRNA library kit Pinus radiata seedlings 4 days post inoculation {'host': 'Pinus radiata', 'strain': 'Fc072v', 'isolate': 'Pinus radiata seedlings 4 days post inoculation', 'treatment': 'Non-treated Replicate 4', 'sample_type': 'Tissue sample', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': 'Not collected', 'host_tissue_sampled': 'Xylem-phloem'} |
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Literature
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