Bassia scoparia

RNAseq of kochia root competing with two canola

Libraries created with NEBnext ultra-directional for illumina kits. Sample sequences were cleaned of primer sequences and trimmed to a min quality of 20 and min length of 70 bases using BBMAP sub routines

{'age': '1 month', 'temp': '25C', 'tissue': 'root', 'isolate': 'kochia_2weed_expt3_rep2', 'cultivar': 'Fargo1', 'dev_stage': 'late vegetative stage', 'treatment': 'competing with two other plants', 'sample_type': 'tissue sample from individual', 'collected_by': 'Kelley', 'geo_loc_name': 'USA: Fargo ND', 'biosamplemodel': 'Plant', 'collection_date': '2023-01', 'growth_protocol': 'plants were planted at the same time in 8L pots into p[re-wetted potting mix. Plants were grown under greenhouse conditions (16 hr photoperiod with supplemental halogen lighting, at ~25C). Plants were allowed to grow for 30 days by which time the canola had started to bolt and some flowers were observed.', 'isolation_source': 'wild seeds from field plots near Fargo ND', 'biomaterial_provider': 'Horvath'}

RNAseq of kochia root competing with two canola

Libraries created with NEBnext ultra-directional for illumina kits. Sample sequences were cleaned of primer sequences and trimmed to a min quality of 20 and min length of 70 bases using BBMAP sub routines

{'age': '1 month', 'temp': '25C', 'tissue': 'root', 'isolate': 'kochia_2weed_expt3_rep3', 'cultivar': 'Fargo1', 'dev_stage': 'late vegetative stage', 'treatment': 'competing with two other plants', 'sample_type': 'tissue sample from individual', 'collected_by': 'Kelley', 'geo_loc_name': 'USA: Fargo ND', 'biosamplemodel': 'Plant', 'collection_date': '2023-01', 'growth_protocol': 'plants were planted at the same time in 8L pots into p[re-wetted potting mix. Plants were grown under greenhouse conditions (16 hr photoperiod with supplemental halogen lighting, at ~25C). Plants were allowed to grow for 30 days by which time the canola had started to bolt and some flowers were observed.', 'isolation_source': 'wild seeds from field plots near Fargo ND', 'biomaterial_provider': 'Horvath'}

RNAseq of kochia root competing with four canola

Libraries created with NEBnext ultra-directional for illumina kits. Sample sequences were cleaned of primer sequences and trimmed to a min quality of 20 and min length of 70 bases using BBMAP sub routines

{'age': '1 month', 'temp': '25C', 'tissue': 'root', 'isolate': 'kochia_4weed_expt3_rep1', 'cultivar': 'Fargo1', 'dev_stage': 'late vegetative stage', 'treatment': 'competing with four other plants', 'sample_type': 'tissue sample from individual', 'collected_by': 'Kelley', 'geo_loc_name': 'USA: Fargo ND', 'biosamplemodel': 'Plant', 'collection_date': '2023-01', 'growth_protocol': 'plants were planted at the same time in 8L pots into p[re-wetted potting mix. Plants were grown under greenhouse conditions (16 hr photoperiod with supplemental halogen lighting, at ~25C). Plants were allowed to grow for 30 days by which time the canola had started to bolt and some flowers were observed.', 'isolation_source': 'wild seeds from field plots near Fargo ND', 'biomaterial_provider': 'Horvath'}