Dickeya solani
TaxID: 1089444
Basic Information
Dickeya solani
Blackleg of Potato
Dickeya solani is a bacterium that causes blackleg and soft rot in potato crops. Its symptoms are often indistinguishable from those caused by Pectobacterium but is more virulent, causing disease from lower levels of inoculum and spreading through the plant more effectively. The species was first discovered in the Netherlands in 2005, before spreading rapidly, causing 25 C30 million of damage annually by 2010. Three cases appeared in Scotland in 2009 and one in 2010.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Enterobacterales
Pectobacteriaceae
Dickeya
solani
Unclassified
Species
nan
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pectobacteriaceae;g__Dickeya;s__Dickeya solani
nan
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (4 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_000831935.2 | Complete Genome | 4 | 4932 | 4932 | - |
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ASM83193v2 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR23852892 | - | - | - | 37596685 | - | |
|
PRJNA944547 SRX19665823 SRP427148 RNA-Seq of D. solani IFB0223 A strand-specific cDNA library was prepared using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (New England BioLabs Inc., Ipswich, Massachusetts, USA). IFB0223 {'host': 'rhizosphere', 'strain': 'IFB0223', 'condition': 'M9', 'replicate': '2', 'sample_type': 'cell culture', 'geo_loc_name': 'Germany', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2022'} |
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| SRR23852891 | - | - | - | 34956148 | - | |
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PRJNA944547 SRX19665824 SRP427148 RNA-Seq of D. solani IFB0099 A strand-specific cDNA library was prepared using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (New England BioLabs Inc., Ipswich, Massachusetts, USA). IFB0099 {'host': 'rotten potato plant', 'strain': 'IFB0099', 'condition': 'M9+PGA', 'replicate': '2', 'sample_type': 'cell culture', 'geo_loc_name': 'Poland', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2022'} |
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| SRR23852890 | - | - | - | 37230007 | - | |
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PRJNA944547 SRX19665825 SRP427148 RNA-Seq of D. solani IFB0099 A strand-specific cDNA library was prepared using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (New England BioLabs Inc., Ipswich, Massachusetts, USA). IFB0099 {'host': 'rotten potato plant', 'strain': 'IFB0099', 'condition': 'M9+PGA', 'replicate': '1', 'sample_type': 'cell culture', 'geo_loc_name': 'Poland', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2022'} |
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Literature
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