Xanthomonas fragariae
TaxID: 48664
Basic Information
Xanthomonas fragariae
Leaf Blight of Strawberry
Xanthomonas fragariae is a species of bacteria. It causes a leaf spot disease found in strawberries (Fragaria spp.). The type strain is NCPPB1469 from Fragaria chiloensis var. ananassa.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Lysobacterales
Lysobacteraceae
Xanthomonas
fragariae
Unclassified
Species
nan
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas fragariae
nan
Prokaryotes
Photos (5 photos)
Morphological Features
The bacterium is a slow-growing, Gram-negative, motile rod with a single polar flagellum, producing yellowish orange pigment on YDC medium.
Kwon, J. H., et al. (2010). Angular leaf spot of strawberry caused by Xanthomonas fragariae in Korea. Research in Plant Disease, 16(1), 97-100.
Host Plants (3 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Fragaria vesca | Host |
| Fragaria virginiana | Host |
| Fragaria x ananassa | Host |
Quarantine Status (60 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Austria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Belgium | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Bulgaria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Bahrain | Quarantine pests | 2003 |
| Switzerland | Regulated non-quarantine pest | 2019 |
| Chile | Quarantine pests | 2019 |
| China | Quarantine pests | 2021 |
| Cyprus | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Czechia | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Germany | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
Distribution (47 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Argentina | Present | — |
| Australia | Absent | |
| Austria | Present | — |
| Belgium | Present | — |
| Bulgaria | Present | — |
| Brazil | Present | |
| Switzerland | Present | — |
| Chile | Absent | — |
| China | Present | |
| Cyprus | Absent | — |
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_001705545.1 | Complete Genome | 4 | 4232 | 4232 | - |
|
|
|
ASM170554v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| ERR3452537,ERR3452538 | - | - | - | 1570094 | - | |
|
PRJEB33676 ERX3474516 ERP116487 Illumina MiSeq paired end sequencing; Transcriptome analysis of Xanthomonas fragariae in strawberry leaves 15 days after inoculation Transcriptome analysis of Xanthomonas fragariae in strawberry leaves 15 days after inoculation IPO 3485 {'strain': 'IPO 3485', 'genotype': 'wild type genotype', 'broker name': 'ArrayExpress', 'external id': 'SAMEA5815213', 'sample name': 'E-MTAB-8189:Sample 3', 'insdc status': 'public', 'submitter id': 'E-MTAB-8189:Sample 3', 'ena-last-update': '2019-07-24T15:17:17Z', 'scientific_name': 'Xanthomonas fragariae', 'ena-first-public': '2020-07-31T04:03:45Z', 'growth condition': 'Strawberry cv. Elsanta leaves', 'insdc center name': 'Research Institute of Horticulture,', 'insdc last update': '2019-07-24T15:17:17Z', 'insdc first public': '2020-07-31T04:03:45Z'} |
||||||
| ERR3452539,ERR3452540 | - | - | - | 1752677 | - | |
|
PRJEB33676 ERX3474517 ERP116487 Illumina MiSeq paired end sequencing; Transcriptome analysis of Xanthomonas fragariae in strawberry leaves 15 days after inoculation Transcriptome analysis of Xanthomonas fragariae in strawberry leaves 15 days after inoculation IPO 3485 {'strain': 'IPO 3485', 'genotype': 'wild type genotype', 'broker name': 'ArrayExpress', 'external id': 'SAMEA5815214', 'sample name': 'E-MTAB-8189:Sample 4', 'insdc status': 'public', 'submitter id': 'E-MTAB-8189:Sample 4', 'ena-last-update': '2019-07-24T15:17:17Z', 'scientific_name': 'Xanthomonas fragariae', 'ena-first-public': '2020-07-31T04:03:45Z', 'growth condition': 'Strawberry cv. Elsanta leaves', 'insdc center name': 'Research Institute of Horticulture,', 'insdc last update': '2019-07-24T15:17:17Z', 'insdc first public': '2020-07-31T04:03:45Z'} |
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| ERR3452541,ERR3452542 | - | - | - | 1859958 | - | |
|
PRJEB33676 ERX3474518 ERP116487 Illumina MiSeq paired end sequencing; Transcriptome analysis of Xanthomonas fragariae in strawberry leaves 15 days after inoculation Transcriptome analysis of Xanthomonas fragariae in strawberry leaves 15 days after inoculation IPO 3485 {'strain': 'IPO 3485', 'genotype': 'wild type genotype', 'broker name': 'ArrayExpress', 'external id': 'SAMEA5815215', 'sample name': 'E-MTAB-8189:Sample 5', 'insdc status': 'public', 'submitter id': 'E-MTAB-8189:Sample 5', 'ena-last-update': '2019-07-24T15:17:17Z', 'scientific_name': 'Xanthomonas fragariae', 'ena-first-public': '2020-07-31T04:03:45Z', 'growth condition': 'Strawberry cv. Elsanta leaves', 'insdc center name': 'Research Institute of Horticulture,', 'insdc last update': '2019-07-24T15:17:17Z', 'insdc first public': '2020-07-31T04:03:45Z'} |
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Literature
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