Fusarium oxysporum f. sp. radicis-cucumerinum
TaxID: 327505
Basic Information
Fusarium oxysporum f. sp. radicis-cucumerinum
Fusarium Root and Stem Rot of Cucumber
nan
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Sordariomycetes
Hypocreales
Nectriaceae
Fusarium
oxysporum
f. sp. radicis-cucumerinum
Under_Species
nan
d__Eukaryota;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Nectriaceae;g__Fusarium;s__Fusarium oxysporum
nan
Fungal organisms
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (4 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_001702645.1 | Scaffold | 49 | 345 | 662 | - |
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Forc031 |
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Transcriptomes (2 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR5666310 | - | - | - | 8977634 | missing | |
|
PRJNA389503 SRX2901901 SRP108975 fungi Forc016_RNAseq_invitro For transcriptome sequencing, 10-day-old cucumber Paraiso seedlings were inoculated with conidia of Forc016 roots of infected plants were harvested ten days after inoculation and flash-frozen in liquid nitrogen. Additionally, mycelium from five-day-old in vitro KNO3 cultures was harvested. Total RNA was extracted as described previously (Schmidt et al., 2013). cDNA synthesis, library preparation (200 bp inserts) and Illumina sequencing was performed at BGI. Forc016 {'strain': 'Forc016', 'geo_loc_name': 'Canada', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2000', 'forma_specialis': 'radicis-cucumerinum', 'isolate_name_alais': '33'} |
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| SRR5666309 | - | - | - | 39998987 | missing | |
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PRJNA389503 SRX2901902 SRP108975 fungi Forc016_RNAseq_inplanta For transcriptome sequencing, 10-day-old cucumber Paraiso seedlings were inoculated with conidia of Forc016 roots of infected plants were harvested ten days after inoculation and flash-frozen in liquid nitrogen. Additionally, mycelium from five-day-old in vitro KNO3 cultures was harvested. Total RNA was extracted as described previously (Schmidt et al., 2013). cDNA synthesis, library preparation (200 bp inserts) and Illumina sequencing was performed at BGI. Forc016 {'strain': 'Forc016', 'geo_loc_name': 'Canada', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2000', 'forma_specialis': 'radicis-cucumerinum', 'isolate_name_alais': '33'} |
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Literature
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