Pectobacterium carotovorum

TaxID: 554

Basic Information

Pectobacterium carotovorum

Bad-smell Sap Bacterium

Pectobacterium carotovorum is a bacterium of the family Pectobacteriaceae; it used to be a member of the genus Erwinia. The species is a plant pathogen with a diverse host range, including many agriculturally and scientifically important plant species. It produces pectolytic enzymes that hydrolyze pectin between individual plant cells. This causes the cells to separate, a disease plant pathologists term bacterial soft rot. Specifically, it causes beet vascular necrosis and blackleg of potato and other vegetables (hence the name carotovora C "carrot-eater"), as well as slime flux on many different tree species. Currently, there are four described subspecies of P. carotovorum (carotovorum, brasiliense, odoriferum, and actinidiae). This bacterium is a ubiquitous plant pathogen with a wide host range (carrot, potato, tomato, leafy greens, squash and other cucurbits, onion, green peppers, African violets, etc.), able to cause disease in almost any plant tissue it invades. It is a very economically important pathogen in terms of post-harvest losses, and a common cause of decay in stored fruits and vegetables. Decay caused by P. carotovora is often referred to as "bacterial soft rot" though this may also be caused by other bacteria. Most plants or plant parts can resist invasion by the bacteria, unless some type of wound is present. High humidity and temperatures around 30 C (86 F) favor development of decay. The cells become highly motile near this temperature (26 C (79 F)) when fructose is present. Mutants can be produced which are less virulent. Virulence factors include: pectinases, cellulases, (which degrade plant cell walls), and also proteases, lipases, xylanases, and nucleases (along with the normal virulence factors for pathogens C Fe acquisition, lipopolysaccharide (LPS) integrity, multiple global regulatory systems).

from Wikipedia

Taxonomic Information

Bacteria

Pseudomonadota

Gammaproteobacteria

Enterobacterales

Pectobacteriaceae

Pectobacterium

carotovorum

nan

Photos (5 photos)

Pectobacterium carotovorum
c
(c) kimpen18@BY-NC
Pectobacterium carotovorum
c
(c) Ethan Lafon@BY-NC
Pectobacterium carotovorum
c
(c) kimpen18@BY-NC
Pectobacterium carotovorum
c
(c) naturalist charlie@BY
Pectobacterium carotovorum
c
(c) naturalist charlie@BY

Morphological Features

No morphological description available.

Host Plants (0 host plants)

Data sources: EPPO Global Database and relevant literature.

No host plants available.

Quarantine Status (33 records)

Data sources: IPPC website and national quarantine websites; verified by human review.

Country Status Year Added
Angola Quarantine pests —
Austria RNQP ((EU) 2019/2072 Annex IV) 2019
Belgium RNQP ((EU) 2019/2072 Annex IV) 2019
Burkina Faso Present —
Bulgaria RNQP ((EU) 2019/2072 Annex IV) 2019
Switzerland Regulated non-quarantine pest 2019
Cyprus RNQP ((EU) 2019/2072 Annex IV) 2019
Czechia RNQP ((EU) 2019/2072 Annex IV) 2019
Germany RNQP ((EU) 2019/2072 Annex IV) 2019
Denmark RNQP ((EU) 2019/2072 Annex IV) 2019
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Distribution (18 countries)

Data Sources: EPPO Global Database and GBIF.

18
Present
0
Absent
0
Unknown/Other
Country Status State
Argentina Present —
Australia Present —
Canada Present —
China Present —
France Present —
United Kingdom Present —
Greece Present —
Hong Kong, China Present —
Sri Lanka Present —
Morocco Present —
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Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

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Genomes (3 records)

Data source: NCBI.

Assembly Accession Assembly Level Genome Size(Mb) Contig N50(Kb) Scaffold N50(Kb) BUSCO% Downloads Actions
GCF_013488025.1 Complete Genome 4 4892 4892 -
GCF_003594975.1 Contig 4 139 139 -
GCF_002869945.1 Contig 4 158 158 -

Transcriptomes (6 records)

Data source: NCBI.

Run ID Tissue Developmental Stage Sex Read Count Location Actions
SRR34873925 - - - 17928101 missing
SRR34873924 - - - 17220751 missing
SRR34873923 - - - 10099503 missing
SRR34873919 - - - 11700810 missing
SRR34873918 - - - 10287557 missing
SRR34873917 - - - 10692772 missing

DNA Barcodes (0 records)

View all

Data source: BOLD.

No DNA barcode records available.

Literature