Pectobacterium carotovorum
TaxID: 554
Basic Information
Pectobacterium carotovorum
Bad-smell Sap Bacterium
Pectobacterium carotovorum is a bacterium of the family Pectobacteriaceae; it used to be a member of the genus Erwinia. The species is a plant pathogen with a diverse host range, including many agriculturally and scientifically important plant species. It produces pectolytic enzymes that hydrolyze pectin between individual plant cells. This causes the cells to separate, a disease plant pathologists term bacterial soft rot. Specifically, it causes beet vascular necrosis and blackleg of potato and other vegetables (hence the name carotovora C "carrot-eater"), as well as slime flux on many different tree species. Currently, there are four described subspecies of P. carotovorum (carotovorum, brasiliense, odoriferum, and actinidiae). This bacterium is a ubiquitous plant pathogen with a wide host range (carrot, potato, tomato, leafy greens, squash and other cucurbits, onion, green peppers, African violets, etc.), able to cause disease in almost any plant tissue it invades. It is a very economically important pathogen in terms of post-harvest losses, and a common cause of decay in stored fruits and vegetables. Decay caused by P. carotovora is often referred to as "bacterial soft rot" though this may also be caused by other bacteria. Most plants or plant parts can resist invasion by the bacteria, unless some type of wound is present. High humidity and temperatures around 30 C (86 F) favor development of decay. The cells become highly motile near this temperature (26 C (79 F)) when fructose is present. Mutants can be produced which are less virulent. Virulence factors include: pectinases, cellulases, (which degrade plant cell walls), and also proteases, lipases, xylanases, and nucleases (along with the normal virulence factors for pathogens C Fe acquisition, lipopolysaccharide (LPS) integrity, multiple global regulatory systems).
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Enterobacterales
Pectobacteriaceae
Pectobacterium
carotovorum
nan
Species
nan
k__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pectobacteriaceae;g__Pectobacterium;s__Pectobacterium carotovorum
nan
Prokaryotes
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (33 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Angola | Quarantine pests | — |
| Austria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Belgium | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Burkina Faso | Present | — |
| Bulgaria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Switzerland | Regulated non-quarantine pest | 2019 |
| Cyprus | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Czechia | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Germany | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Denmark | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
Distribution (18 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Argentina | Present | — |
| Australia | Present | — |
| Canada | Present | — |
| China | Present | — |
| France | Present | — |
| United Kingdom | Present | — |
| Greece | Present | — |
| Hong Kong, China | Present | — |
| Sri Lanka | Present | — |
| Morocco | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (3 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_013488025.1 | Complete Genome | 4 | 4892 | 4892 | - |
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ASM1348802v1 |
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| GCF_003594975.1 | Contig | 4 | 139 | 139 | - |
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ASM359497v1 |
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| GCF_002869945.1 | Contig | 4 | 158 | 158 | - |
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ASM286994v1 |
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Transcriptomes (6 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR34873925 | - | - | - | 17928101 | missing | |
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PRJNA1301947 SRX30005154 SRP606731 bacteria GSM9154269: RNA-seq of Pectobacterium carotovorum PCC27 WT at early stationary phase (replicate 1); Pectobacterium carotovorum; RNA-Seq {'batch': '1', 'genotype': 'wild type', 'cell type': 'bacterial cells', 'treatment': 'early stationary phase', 'source_name': 'bacterial cells'} |
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| SRR34873924 | - | - | - | 17220751 | missing | |
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PRJNA1301947 SRX30005155 SRP606731 bacteria GSM9154270: RNA-seq of Pectobacterium carotovorum PCC27 WT at early stationary phase (replicate 2); Pectobacterium carotovorum; RNA-Seq {'batch': '1', 'genotype': 'wild type', 'cell type': 'bacterial cells', 'treatment': 'early stationary phase', 'source_name': 'bacterial cells'} |
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| SRR34873923 | - | - | - | 10099503 | missing | |
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PRJNA1301947 SRX30005156 SRP606731 bacteria GSM9154271: RNA-seq of Pectobacterium carotovorum PCC27 WT at early stationary phase (replicate 3); Pectobacterium carotovorum; RNA-Seq {'batch': '1', 'genotype': 'wild type', 'cell type': 'bacterial cells', 'treatment': 'early stationary phase', 'source_name': 'bacterial cells'} |
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| SRR34873919 | - | - | - | 11700810 | missing | |
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PRJNA1301947 SRX30005160 SRP606731 general GSM9154275: RNA-seq of Pectobacterium carotovorum PCC27 hexA mutant at early stationary phase (replicate 1); Pectobacterium carotovorum; RNA-Seq {'batch': '1', 'genotype': 'hexA mutant', 'cell type': 'bacterial cells', 'treatment': 'early stationary phase', 'source_name': 'bacterial cells'} |
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| SRR34873918 | - | - | - | 10287557 | missing | |
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PRJNA1301947 SRX30005161 SRP606731 general GSM9154276: RNA-seq of Pectobacterium carotovorum PCC27 hexA mutant at early stationary phase (replicate 2); Pectobacterium carotovorum; RNA-Seq {'batch': '1', 'genotype': 'hexA mutant', 'cell type': 'bacterial cells', 'treatment': 'early stationary phase', 'source_name': 'bacterial cells'} |
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| SRR34873917 | - | - | - | 10692772 | missing | |
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PRJNA1301947 SRX30005162 SRP606731 general GSM9154277: RNA-seq of Pectobacterium carotovorum PCC27 hexA mutant at early stationary phase (replicate 3); Pectobacterium carotovorum; RNA-Seq {'batch': '1', 'genotype': 'hexA mutant', 'cell type': 'bacterial cells', 'treatment': 'early stationary phase', 'source_name': 'bacterial cells'} |
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Literature
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