Pratylenchus vulnus

TaxID: 45931

Basic Information

Scientific Name *

Pratylenchus vulnus

Common Name

Houtwortellesieaaltje, Walnut Root-lesion Nematode, walnut meadow nematode

Introduction

Pratylenchus vulnus (also known by the common names walnut meadow nematode and walnut root-lesion nematode) is a species of plant pathogenic nematode best known for infecting Persian walnut. It is also known to infest potatoes, apricots, peaches and nectarines, holiday cacti, grape and citruses.

from Wikipedia

Taxonomic Information

Domain/Kingdom

Eukaryota

Phylum

Nematoda

Class

Chromadorea

Order

Rhabditida

Family

Pratylenchidae

Genus

Pratylenchus

Species

vulnus

Subspecies

-

Photos (5 photos)

c

Morphological Features

No morphological description available.

Host Plants (0 host plants)

Data sources: EPPO Global Database and relevant literature.

No host plants available.

Quarantine Status (40 records)

Data sources: IPPC website and national quarantine websites; verified by human review.

Country	Status	Year Added
Austria	RNQP ((EU) 2019/2072 Annex IV)	2019
Belgium	RNQP ((EU) 2019/2072 Annex IV)	2019
Bulgaria	RNQP ((EU) 2019/2072 Annex IV)	2019
Switzerland	Regulated non-quarantine pest	2019
Costa Rica	Absent	—
Cyprus	RNQP ((EU) 2019/2072 Annex IV)	2019
Czechia	RNQP ((EU) 2019/2072 Annex IV)	2019
Germany	RNQP ((EU) 2019/2072 Annex IV)	2019
Denmark	RNQP ((EU) 2019/2072 Annex IV)	2019
Dominican Republic	Quarantine pests	—

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Distribution (35 countries)

Data Sources: EPPO Global Database and GBIF.

35

Present

0

Absent

0

Unknown/Other

Country	Status	State
Argentina	Present	—
Australia	Present
Belgium	Present	—
Bulgaria	Present	—
Brazil	Present
Canada	Present	—
China	Present
Cameroon	Present	—
Cuba	Present	—
Germany	Present	—

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Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Download CSV

Genomes (1 records)

Data source: NCBI.

Assembly Accession	Assembly Level	Genome Size(Mb)	Contig N50(Kb)	Scaffold N50(Kb)	BUSCO%	Downloads	Actions
GCA_054131405.1	Chromosome	61	4588	10106	-	FASTA
Assembly Name ASM5413140v1

Transcriptomes (3 records)

Data source: NCBI.

Run ID	Tissue	Developmental Stage	Sex	Read Count	Location	Actions
SRR34270209	Roots	-	-	16173701	USA: Davis, California	Download NCBI
BioProject PRJNA1283215 Experiment ID SRX29444022 Study ID SRP595639 Category general Title The RNA-seq data of Pratylenchus vulnus at the second-stage juveniles (J2) parasitizing grapevine. Design Description To annotate the genome of Pv, we sequenced its transcriptome at different developmental ages. Strain Davis Sample Attributes {'host': 'Walnut', 'tissue': 'Roots', 'isolate': 'Davis', 'geo_loc_name': 'USA: Davis, California', 'biosamplemodel': 'Invertebrate', 'collection_date': '2024-06-01'}
SRR34270208	Roots	-	-	17009310	USA: Davis, California	Download NCBI
BioProject PRJNA1283215 Experiment ID SRX29444023 Study ID SRP595639 Category general Title The RNA-seq data of Pratylenchus vulnus at the second-stage juveniles (J2) parasitizing grapevine. Design Description To annotate the genome of Pv, we sequenced its transcriptome at different developmental ages. Strain Davis Sample Attributes {'host': 'Walnut', 'tissue': 'Roots', 'isolate': 'Davis', 'geo_loc_name': 'USA: Davis, California', 'biosamplemodel': 'Invertebrate', 'collection_date': '2024-06-01'}
SRR34270207	Roots	-	-	22788796	USA: Davis, California	Download NCBI
BioProject PRJNA1283215 Experiment ID SRX29444024 Study ID SRP595639 Category general Title The RNA-seq data of Pratylenchus vulnus at the third-stage juveniles (J3) parasitizing grapevine. Design Description To annotate the genome of Pv, we sequenced its transcriptome at different developmental ages. Strain Davis Sample Attributes {'host': 'Walnut', 'tissue': 'Roots', 'isolate': 'Davis', 'geo_loc_name': 'USA: Davis, California', 'biosamplemodel': 'Invertebrate', 'collection_date': '2024-06-01'}

DNA Barcodes (52 records)

View all

Data source: BOLD.

Process ID	BIN	Marker	Length	Country	Date	Lat/Lon	Sequence
GBNEM8763-23	-	18S-5P	525	Unrecoverable	-	-	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGTGTTTTGGTGACTCTG-AATAGCTAC---AGCTGATCGCAT-G-GTCATGTACCGGCGACGTGTCTATC-AAGTGTCTGCCT--TAT-CAACTTTCGATGGT---------AGTT-TATGTGCCTACCATGGTTGTT--ACGGGTAACGGAGAATAAGGGTTCG-ACTCCG-GAGAGGG--------AGCCTGAGA-AACGGCTACCACATCCAAGGAAGGC-AGCAGGC------------------GCGCAAATTACCCACT-CTCGGCA-------------TGAGG---AGGTAGTGA----C---GAAAAATAACGAGACCGTTC------TC--AATGAGGCCGGTTATC-GGAATGAA-TA-CAATTTAAACC--CGTTAATGAGGATCTAT-------GAGA--GGGCAAGTCTGGTGCCAGCAGCCGCGGTA-ATTCCAGCTCTCAAAG-TGTATATCGTCATTGCT-GCGGTTAAAAAG--CTCGTAGTTGGATCTGCGCTTGAGGACTTGGTCCACCATTTCGGTGCTGAACTAAGCTCCTCGG-C-----TATATTTATC-AGCTGGTTTTCCCTG--C------G---TTG--------------------------------------------------CCTTTA-CCGGTCGCGTAGG----GTGGCTAGCAA-GTTTACTT
GBNEM8762-23	-	18S-5P	525	Unrecoverable	-	-	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGTGTTTTGGTGACTCTG-AATAGCTAC---AGCTGATCGCAT-G-GTCATGTACCGGCGACGTGTCTATC-AAGTGTCTGCCT--TAT-CAACTTTCGATGGT---------AGTT-TATGTGCCTACCATGGTTGTT--ACGGGTAACGGAGAATAAGGGTTCG-ACTCCG-GAGAGGG--------AGCCTGAGA-AACGGCTACCACATCCAAGGAAGGC-AGCAGGC------------------GCGCAAATTACCCACT-CTCGGCA-------------TGAGG---AGGTAGTGA----C---GAAAAATAACGAGACCGTTC------TC--AATGAGGCCGGTTATC-GGAATGAA-TA-CAATTTAAACC--CGTTAATGAGGATCTAT-------GAGA--GGGCAAGTCTGGTGCCAGCAGCCGCGGTA-ATTCCAGCTCTCAAAG-TGTATATCGTCATTGCT-GCGGTTAAAAAG--CTCGTAGTTGGATCTGCGCTTGAGGACTTGGTCCACCATTTCGGTGCTGAACTAAGCTCCTCGG-C-----TATATTTATC-AGCTGGTTTTCCCTG--C------G---TTG--------------------------------------------------CCTTCA-CCGGTCGCGTAGG----GTGGCTAGCAA-GTTTACTT
GBNEM8761-23	-	18S-5P	530	Unrecoverable	-	-	--------------------------------------------------------AATGAATTGCGTACGGCTCATTAGAG---CA-GATATCACCTTATCCGGG---------ATCCTCATAT-GGA---TAACTGCGGAAA---TACTGGAG-CTAATACATGCAACTATACCCC----AACG-C-----------------------------AAG-----GCGGGGTGCAATTATTAGAAC--------------------------------------------------------AGACCAAA----CGTTTT-CG---GACGTTGTTT---GTTGACTCTGA-ATAAAGCA-GTTTACTGTCAGTTTCGACTGACTCTATCCGGA-AAGGGTGTCTGCCCTT--TCAACTAGATGGTAGTTTA--TTGGAC-TAC-CAT-GG----TTGT-TACGGGTAACGGAGAATAAGGGTTCGACTCCGGAGAG-GGAGCCTTAGAAACGGCTACCACGTCCAAGGAAGGCAGCAGGCGCGAAACTT-AT-CCACTGTTGAGTA--TG---AGATAGTGAC-----TAAAAATATAAAGACT--CATCCT---TTTGGAT-GAGTTATTTCAATG---A-GT-TGAATA-C-AAATGATT----------CT-TCG--AG--TAGCAAGGAGAGGG-CA--A------GT--CT-------GGT-G--CC-AGCA---GCCGCGGTAATTCCA--------GCT--CTCCTAGT-GTATCTCGTT-ATTGCTGCG-GTTAAAAAG----------------------------------------------------------------------------------------------------------
GBNEM8760-23	-	18S-5P	515	Unrecoverable	-	-	-----------------------------------------------------------CAGCCGCGAATGGCTCATTACAA---CAGCCACTGTTTACTTGATCTTGA-----TTATCCTACTT-GGA---TAACTGTGGTAA---TTCTAGAG-CTAATACACGC-AATAAAGCTCCGACCTT-------------------------------ACGG-----GACGAGCGCATTTATTAGACCA-AAACCAAT-CGGGCC---------------------TC-GGC--------------------------CTGAAC----GGTGGTGAC-TCTGAATA-ACTGA-GCTGATCG-CATGGTCTTTGTACC---GGCGACGCATCTTTC-AAGTGTCTGCCTTATC--AACTTTCGATGGTAGTTTA--TGTGCC-TAC-CAT-GG----TTGT-TACGGGTAACGGAGAATAAGGGTTCGACTCCGGAGAG-GGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATT-AC-CCACTCTCGGCACGAG-----GAGGTAGTGA---CGAAAAATAACGAGGCG--GTTCTCT-A-AGAGGC-CCGCTATCGGAATG---G-GT-ACAATT-T-AAACCCTT----------TA-ACG--AG--GACCTATGAGAGGG-CA--A------GT--CT-------GGT-G--CC-AGCA---GCCGCGGTAATTCCA--------GCT--CTCAAG-------------------------------------------------------------------------------------------------------------------------------------------
GBNEM8759-23	-	18S-5P	732	Taiwan	-	-	ACCTGGTTGATCCTGC-CAGTGATTATATGCTCGTCTCAAGGATTGA--GCCATGCATATGT---AAGTTCACATCTATAT-----------------ACGATGAAAC-AGCGAAG--------CGCTC--AT-----------TAAATC-AGTTATTGTCTGTTCGATGGTATA-------AGCCGTGG--ATAACTATG-G---CAAGCTATAGCTAATACATGTACGAACCAACATCAGCAATGGT------------------------------------G-TTGGGGCATTTATTAGTTTAAAAC--------------------------------------------------------------CAATCAAGACG-GTAACGT-CTTGAAGTTGAACCTGAATAACT-AT-GCA---------AACCG-AGT---GT-GTATACATTTGGTAATTCGATTGAAT-TTCTGCCCTATCAACTTG----TTGTTGGGGTAGTGGCC-CAACAAGGTT--TTGACGGG---TAACGG-GGAATCA--GGGTTCGATTCCGGAGAGGGAGCCT-GAGAAA-CGGCTACCACATCC-AAGGAAGG-------------CAGCAGGCGCGAAAATTACCCAATCCGG-TCAT--CGGGAGGT-----AGCGACGAGAAATACTAAACTTAGAAA---AT-------------------------------------CTAGGTATATGAATG----------GAGTCAATATAGAAA-CTTGACT-G---AAAACTA--CTGGAGGGCAAGTCTGGTGCCAGC----AGCCGCGGTAAT---TC--CAGCTCCAGTA---GTGTA--TATCA-----------AAATTG-T--TGCGGTTAAAACGCTC-GTAG-------TTGGATGACAAAAATTTGTGACACTTGATACTTTTGATAGTAG-CTTGTGGAACAGATTTT------TTT---ATTGCAA-----------------ATT-------------CCTGCAGTTGCT--------TAAC----TG--------------------------TCAACTGTA---GGTCAT---------T-----------------------------------------------------------TGCAAAGCG
GBNEM8758-23	-	18S-5P	608	-	-	-	CTAATACATGCAAACAGAGTCCCGACCAG-AA------------------------------------------------------------------ATGGAAGGGACGCTTTTATTAGATCAAAACCAATCGACGTCCGTTTGCCTTT------------------------------T----------------------GG---CCGACGGCGCCGTA-CTCC--TTGGTGACTCTGAAT-AAC--TTTTAGCAGATCGC---ACGGTCCTCGAACCGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGCATCCTTCAAATGTCTGCCTTATC-AACTGTCGATGGTAG-GTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGG-AATCAGGGTTCGATTCCGGAGAGGGA-GCCTG--AGAAACGGCT-----ACCACATCCAAGGAAGGC-AGCAGGC--GCGCAAATTACCCAC-TCCCGGCACGGGG------------AGGTAGTGACGAAAAATAA--CGATACGGGACTCA--TC-CGAG-GCCC-CGTAATCGGAATGAGTATACTCTAAATC-CTT-ATA---CGAGTATCAATT-GGAGGGCAAGTC-----TGGTG-CCAGCAGCCGCGGTAA-TTCCAGCTCC--AATAGCG-----TATATTAA-AGTT--GTTGC-GGTTA---AAAAGCTC-G------------------------TACGTCGG-TTCACCGCCTGTCGGTGTTCAACTGGCGTGTATG-C-----------GGGACGTCCTGCCGGTGGCGGTCCGGTTCC-----------------------------------------------------CC-GTAG--GT----------------------------------------T-------CGTAAGGGGCGTC-------CGTGCTAATTG--------------------------------------CTC----G--CG
GBNEM8757-23	-	18S-5P	605	-	-	-	CTAATACATGCAAACAGAGTCCCGACCAG-AA------------------------------------------------------------------ATGGAAGGGACGCTTTTATTAGATCAAAACCAATCGGCGTCCGTTTTCCTC-------------------------------------------------------CGGGTCTACGGCGTCGTA-CTCC--TTGGTGACTCTGAAT-AAC--TTTTGGCAGATCGC---ACGGTCTCCGAACCGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGCATCCTTCAAATGTCTGCCTTATC-AACTGTCGATGGTAG-GTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGG-AATCAGGGTTCGATTCCGGAGAGGGA-GCCTG--AGAAACGGCT-----ACCACATCCAAGGAAGGC-AGCAGGC--GCGCAAATTACCCAC-TCCCGGCACGGGG------------AGGTAGTGACGAAAAATAA--CGATACGGGACTCA--TC-CGAG-GCCC-CGTAATCGGAATGAGTATACTCTAAATC-CTT-ATA---CGAGTATCAATT-GGAGGGCAAGTC-----TGGTG-CCAGCAGCCGCGGTAA-TTCCAGCTCC--AATAGCG-----TATATTAA-AGTT--GTTGC-GGTTA---AAAAGCTC-GT-TCGG---------------------------TTCACCGCCTGTCGGTGTTTAACTGGCGTGCATG-C-----------GGGACGTCCTGCCGGTGGCGGCCCGGTCCC-----------------------------------------------------GC-GGCA--GC----------------------------------------G-------ACTTAGGGTTCGG-------CCAGCGGT--T--------------------------------------TCCG---T--TGC
GBNEM8756-23	-	18S-5P	627	Spain	-	-	CTAATACATGCAAACAGAGTCCAGACCACGATGAG----------------------------------------------------------------TGAGACGGACGCTTTTATTAGACTAAAACCAATCGGTCGTCCGAGTTCCTT------------------------------C------------------------GGGTCCGCGGCGCCGTT-TAGT--TTGGTGACTCTGGAT-A-----ACAGGCTGATCGC-A-CGGT-CTACGAACCGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGTATCCTTCAAATGTCTGCCTTATC-AACTGACGATGGTTG-GTTCTGCGCCTACCATGGTTTTGACGGGTGACGGGG-AATCAGGGTTCGATTCCGGAGAGGGA-GCCTG--AGAAACGGCT-----ACCACATCCAAGGAAGGC-AGCAGGC--GCGCAAATTACCCACTCTCAGTAC-GAGG------------AGGTAGTGACGAAAAATAA--CGATACGGGACTCA--TC---CGAGGCCCCGTAATCGGAATGAGCATACTCTAAACC-CTT-ATA---CGAGTATCAATT-GGAGGGCAAGTC-----TGGTG-CCAGCAGCCGCGGTAA-TTCCAGCTCC--AATAGCG-----TATATAA--AGTT--GTTGC-GGTTA---AAAAGCTC-GT-AGTTG---GATCTGTGTCCAGCGCCGCCGGTTCACCGCCTGTCGGTGTTCAACTGGCGTGCAG---------CGG---G--ACGTCCTGTCCGGTGGCGGTTCGGTTA-----------------------------CC-----------TGCGGGCACGTAGGGGTCGTC-------------------------------------------------------------------CGAGCATCG---C--------------------------------------TCG--------CGC
GBNEM8755-23	-	18S-5P	606	Japan	-	-	CTAATACATGCAAACAGAGTC-CCGACCAGAA------------------------------------------------------------------GTGGAAGGGACGCTTTTATTAGATCAAGACCAATCGACGTCGCT---------------------------------------------C-----------C----------GGCGGCGCCGTA-CTCC--TTGGTGACTCTGAAT-AAC--TTTTGGCAGATCGC---ACGGTCCTCGTACCGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGCATCCTTCAAATGTCTGCCTTATC-AACTGTCGATGGTAG-GTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGG-AATCAGGGTTCGATTCCGGAGAGGGA-GCCTG--AGAAACGGCT-----ACCACATCCAAGGAAGGC-AGCAGGC--GCGCAAATTACCCAC-TCCCGGCACGGGG------------AGGTAGTGACGAAAAATAA--CGATGCGGGACTCA--TC-CGAG-GCCC-CGTAATCGGAATGAGTATACTCTAAATC-CTT-ATA---CGAGTATCCATT-GGAGGGCAAGTC-----TGGTG-CCAGCAGCCGCGGTAA-TTCCAGCTCC--AATAGCG-----TATATTAA-AGTT--GTTGC-GGTTA---AAAAGCTC-GT-AGTTG---GATCTGGCCGGTTCACCGCCTGTCGGTGTCAAACTGGCGTGTTTG-C-----------------------GGGACGTCCTGTCGGTGGTGGTTCGGGGCT-----------------------------------------------------TC-GTCGAC------------------------------------------C-------CTAAG---------------GGCT----------------------------------------------GTCCCCG--CGGCTCCC--------------------------------T----------------------------------GAA---------GG
GBNEM8754-23	-	18S-5P	620	Japan	-	-	CTAATACATGCAAACAGAGTC-CCGACCAGAA------------------------------------------------------------------GTGGAAGGGACGCTTTTATTAGATCAAGACCAATCGACGTCGCTC---CGGC------------------------------G---------------------------------GCGCCGTA-CTCC--TTGGTGACTCTGAAT-AAC--TTTTGGCAGATCGC---ACGGTCCTCGTACCGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGCATCCTTCAAATGTCTGCCTTATC-AACTGTCGATGGTAG-GTTCTGCGCCTACCATGGTTGTAACGGGTAACGGGG-AATCAGGGTTCGATTCCGGAGAGGGA-GCCTG--AGAAACGGCT-----ACCACATCCAAGGAAGGC-AGCAGGC--GCGCAAATTACCCACTCCCGGCACGGGG-------------AGGTAGTGACGAAAAATAA--CGATGCGGGACTCA--TC-CGAG-GCCC-CGTAATCGGAATGAGTATACTCTAAATC-CTT-ATA---CGAGTATCCATT-GGAGGGCAAGTC-----TGGTG-CCAGCAGCCGCGGTAA-TTCCAGCTCC--AATAGCG-----TATATTAA-AGTT--GTTGC-GGTTA---AAAAGCTA-GC-TCGTAGTGGATCTGTGTCCCGCACCGCCGGTTCACCGCCTGTCGGTGTCAAAC-TGGCGTGTTTG-C-----------GGGACGTCCTGTCGGTGGTGGTTCGGGGCT-----------------------------------------------------TC-GTCGACCC----------------------------------------T-------AAG-----------------GGCA----------------------------------------------GTCCCCG--CGGCTCCC--------------------------------T----------------------------------GAA---------GG

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Pratylenchus vulnus

Basic Information

Taxonomic Information

Photos (5 photos)

Morphological Features

Host Plants (0 host plants)

Quarantine Status (40 records)

Distribution (35 countries)

Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Genomes (1 records)

Transcriptomes (3 records)

DNA Barcodes (52 records)

Literature

State Information