Diplodia sapinea
TaxID: 66738
Basic Information
Diplodia sapinea
Dieback of Pine
Diplodia tip blight, also known as Sphaeropsis blight, is a widespread disease affecting conifers caused by an opportunistic fungal pathogen, Diplodia sapinea. It is found in "both hemispheres between the latitudes 30 and 50 north and south". The diseases symptoms include: damping off and collar rot of seedlings, stem canker, root disease, and, most commonly, shoot blight. These symptoms have caused significant economic loss to nurseries and pine plantations. In a nursery in the north-central United States, losses of 35% have been reported. Shoot blight and eventual die back can cause a reduction of marketable volume in timber by 63%. Infection of terminal shoots can result in dead-top which significantly limits the usable length of the tree trunk. The presence of the pathogen in concert with severe weather conditions can lead to extreme loss. Following a severe hailstorm in South Africa, nearly 5,000 acres of pine plantation were infected with Diplodia tip blight. It was necessary to prematurely harvest large swaths of the plantations resulting in a loss of 45%. Areas that were not harvested prematurely still suffered an average timber loss of 11%.
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Dothideomycetes
Botryosphaeriales
Botryosphaeriaceae
Diplodia
sapinea
Undefined
Species
nan
d__Eukaryota;p__Ascomycota;c__Dothideomycetes;o__Botryosphaeriales;f__Botryosphaeriaceae;g__Diplodia;s__Diplodia sapinea
nan
Fungal organisms
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (4 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_000729945.1 | Scaffold | 35 | 32 | 39 | - |
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ASM72994v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR28903609 | - | - | - | 21164666 | China: Northeast | |
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PRJNA1098348 SRX24460097 SRP500617 fungi RNA-seq Fungi cultured on pine needles. B2 line {'host': 'Pinus sylvestris', 'strain': 'B2', 'isolate': 'B2 line', 'sample_type': 'whole organism', 'geo_loc_name': 'China: Northeast', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2022-10', 'isolation_source': 'Samples were collected from the forest farm in Zhangwu County, Fuxin City, Liaoning Province, China'} |
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| SRR28903608 | - | - | - | 22068470 | China: Northeast | |
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PRJNA1098348 SRX24460098 SRP500617 fungi RNA-seq Fungi cultured on pine needles. B2 line {'host': 'Pinus sylvestris', 'strain': 'B2', 'isolate': 'B2 line', 'sample_type': 'whole organism', 'geo_loc_name': 'China: Northeast', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2022-10', 'isolation_source': 'Samples were collected from the forest farm in Zhangwu County, Fuxin City, Liaoning Province, China'} |
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| SRR28903607 | - | - | - | 20476251 | China: Northeast | |
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PRJNA1098348 SRX24460099 SRP500617 fungi RNA-seq Fungi cultured on pine needles. B2 line {'host': 'Pinus sylvestris', 'strain': 'B2', 'isolate': 'B2 line', 'sample_type': 'whole organism', 'geo_loc_name': 'China: Northeast', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2022-10', 'isolation_source': 'Samples were collected from the forest farm in Zhangwu County, Fuxin City, Liaoning Province, China'} |
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Literature
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