Clavibacter michiganensis
TaxID: 28447
Basic Information
Clavibacter michiganensis
Vascular Wilt of Tomato
Clavibacter michiganensis is an aerobic non-sporulating Gram-positive plant pathogenic actinomycete of the genus Clavibacter. Clavibacter michiganensis has several subspecies. Clavibacter michiganensis subsp. michiganensis causes substantial economic losses worldwide by damaging tomatoes and potatoes.
from Wikipedia
Taxonomic Information
Bacteria
Actinomycetota
Actinomycetes
Micrococcales
Microbacteriaceae
Clavibacter
michiganensis
nan
Species
nan
k__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;g__Clavibacter;s__Clavibacter michiganensis
nan
Prokaryotes
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (42 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Avena sativa | Host |
| Browallia speciosa | Host |
| Brugmansia x candida | Host |
| Brunfelsia lactea | Host |
| Capsicum annuum | Host |
| Capsicum frutescens | Host |
| Cestrum elegans | Host |
| Citrullus lanatus | Host |
| Cucumis sativus | Host |
| Datura metel | Host |
Quarantine Status (41 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Austria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Belgium | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Bulgaria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Bahrain | A2 list | 2003 |
| Switzerland | Regulated non-quarantine pest | 2019 |
| China | Quarantine pest | 2021 |
| Cyprus | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Czechia | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Germany | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Denmark | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
Distribution (86 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Algeria | Absent | — |
| Argentina | Present | — |
| Armenia | Present | — |
| Australia | Present | |
| Austria | Absent | — |
| Azerbaijan | Present | — |
| Belgium | Present | — |
| Bulgaria | Present | — |
| Belarus | Present | — |
| Belize | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_002931135.1 | Scaffold | 3 | 107 | 107 | - |
|
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ASM293113v1 |
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| GCF_000785165.1 | Contig | 3 | 165 | 165 | - |
|
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|
ASM78516v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR31823983 | - | - | - | 10941831 | China: Inner Mongolia | |
|
PRJNA1202210 SRX27184389 SRP553697 bacteria RNA-Seq of Clavibacter michiganensis: WT sample 3 at 36 hpi The total RNA from each sample was extracted using the TransZol Up Plus RNA Kit (TransGen Biotech, Beijing, China) and were first treated to remove ribosomal RNA using the Ribo-Zero Magnetic kit (Bacteria) from EpiCentre Biotechnologies (Illumina, CA, USA) before 5 g from each was used to construct strand-specific transcriptome libraries with the TruSeq Stranded mRNA Sample Prep Kit (Illumina, CA, USA). Solanum lycopersicum {'strain': 'BT0505', 'isolate': 'Solanum lycopersicum', 'lat_lon': 'not collected', 'collected_by': 'laixin Luo', 'geo_loc_name': 'China: Inner Mongolia', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2005', 'isolation_source': 'WT sample 3 at 36 hpi'} |
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| SRR31823981 | - | - | - | 9503594 | China: Inner Mongolia | |
|
PRJNA1202210 SRX27184391 SRP553697 bacteria RNA-Seq of Clavibacter michiganensis: rel sample 2 at time zero The total RNA from each sample was extracted using the TransZol Up Plus RNA Kit (TransGen Biotech, Beijing, China) and were first treated to remove ribosomal RNA using the Ribo-Zero Magnetic kit (Bacteria) from EpiCentre Biotechnologies (Illumina, CA, USA) before 5 g from each was used to construct strand-specific transcriptome libraries with the TruSeq Stranded mRNA Sample Prep Kit (Illumina, CA, USA). Solanum lycopersicum {'strain': 'rel-deleted mutant of BT0506', 'isolate': 'Solanum lycopersicum', 'lat_lon': 'not collected', 'collected_by': 'Kaihong Bai', 'geo_loc_name': 'China: Inner Mongolia', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2022', 'isolation_source': 'rel sample 2 at time zero'} |
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| SRR31823980 | - | - | - | 11141194 | China: Inner Mongolia | |
|
PRJNA1202210 SRX27184392 SRP553697 bacteria RNA-Seq of Clavibacter michiganensis: rel sample 3 at time zero The total RNA from each sample was extracted using the TransZol Up Plus RNA Kit (TransGen Biotech, Beijing, China) and were first treated to remove ribosomal RNA using the Ribo-Zero Magnetic kit (Bacteria) from EpiCentre Biotechnologies (Illumina, CA, USA) before 5 g from each was used to construct strand-specific transcriptome libraries with the TruSeq Stranded mRNA Sample Prep Kit (Illumina, CA, USA). Solanum lycopersicum {'strain': 'rel-deleted mutant of BT0507', 'isolate': 'Solanum lycopersicum', 'lat_lon': 'not collected', 'collected_by': 'Kaihong Bai', 'geo_loc_name': 'China: Inner Mongolia', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2022', 'isolation_source': 'rel sample 3 at time zero'} |
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Literature
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