Pectobacterium brasiliense
TaxID: 180957
Basic Information
Pectobacterium brasiliense
Bacterial Stem Rot
nan
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Enterobacterales
Pectobacteriaceae
Pectobacterium
brasiliense
Unclassified
Species
nan
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pectobacteriaceae;g__Pectobacterium;s__Pectobacterium brasiliense
nan
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (2 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (7 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Algeria | Present | — |
| China | Present | — |
| France | Present | — |
| Morocco | Present | — |
| Syrian Arab Republic | Present | — |
| United States of America | Present | — |
| South Africa | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_001932635.1 | Complete Genome | 4 | 4920 | 4920 | - |
|
|
|
ASM193263v1 |
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| GCF_000738105.1 | Scaffold | 4 | 104 | 369 | - |
|
|
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ASM73810v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR10129581 | - | - | - | 18164916 | - | |
|
PRJNA565562 SRX6858001 SRP221964 RNA-seq of slyA mutant Pcb1692 24 hours post infection on potato tubers Healthy potato tubers were inoculated with Pcb1692 (wild type) and slyA, phoP (mutants), 3 biological replicates were done for each sample. After 12 and 24 hours of incubation macearted tissue was collected and bacteria was separeted from the plant tissue and bacterial RNA PBR1692slyA {'host': 'Potato plant (Solanum tuberosum)', 'strain': 'PBR1692slyA', 'sample_type': 'Whole organism', 'geo_loc_name': 'Brazil: potato plants', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': 'not collected', 'hours post infection': '24'} |
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| SRR10129580 | - | - | - | 24821285 | - | |
|
PRJNA565562 SRX6858002 SRP221964 RNA-seq of phoP mutant Pcb1692 12 hours post infection on potato tubers Healthy potato tubers were inoculated with Pcb1692 (wild type) and slyA, phoP (mutants), 3 biological replicates were done for each sample. After 12 and 24 hours of incubation macearted tissue was collected and bacteria was separeted from the plant tissue and bacterial RNA PBR1692phoP {'host': 'Potato plant (Solanum tuberosum)', 'strain': 'PBR1692phoP', 'sample_type': 'Whole organism', 'geo_loc_name': 'Brazil: potato plants', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': 'not collected', 'hours post infection': '12'} |
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| SRR10129579 | - | - | - | 25819295 | - | |
|
PRJNA565562 SRX6858003 SRP221964 RNA-seq of phoP mutant Pcb1692 24 hours post infection on potato tubers Healthy potato tubers were inoculated with Pcb1692 (wild type) and slyA, phoP (mutants), 3 biological replicates were done for each sample. After 12 and 24 hours of incubation macearted tissue was collected and bacteria was separeted from the plant tissue and bacterial RNA PBR1692phoP {'host': 'Potato plant (Solanum tuberosum)', 'strain': 'PBR1692phoP', 'sample_type': 'Whole organism', 'geo_loc_name': 'Brazil: potato plants', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': 'not collected', 'hours post infection': '24'} |
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Literature
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