Flatidae

Transcriptome of Ormenoides venusta: Sample Orven - Ormenoides venusta

"Construction of libraries and sequencing on the Illumina HiSeq2500 were performed at the W. M. Keck Center for Comparative and Functional Genomics at the University of Illinois at Urbana-Champaign. Messenger RNA was selected from one microgram of high quality total RNA. RNAseq libraries were constructed using the TruSeq Stranded RNA Sample Preparation Kit (Illumina, San Diego, CA). Libraries were sequenced on an Illumina HiSeq2500 with TruSeq SBS sequencing kits version 3. The libraries were sequenced from both ends of the molecules to a total read length of 100nt from each end. The raw .bcl files were converted into demultiplexed fastq files with Casava 1.8.2 (Illumina)."

{'breed': 'wildtype', 'tissue': 'whole organism', 'lat_lon': '40.1044 N 88.2114 W', 'dev_stage': 'adult', 'collected_by': 'Christopher H. Dietrich', 'geo_loc_name': 'USA: Illinois, Champaign County, Urbana', 'biosamplemodel': 'Invertebrate', 'collection_date': '2013-07-21', 'biomaterial_provider': 'Christopher H. Dietrich, Illinois Natural History Survey, University of Illinois, 1816 South Oak Street, Champaign, Illinois 61820, USA'}

Illumina NovaSeq X paired end sequencing

Illumina sequencing of sample accession SAMEA116283232 for study accession PRJEB90917. This submission includes reads tagged with the sequence CGGGCGGC.

{'gal': 'Sanger Institute', 'sex': 'male', 'tolid': 'ihCypFauv6', 'habitat': 'Sea-cliff Shrubland', 'lifestage': 'adult', 'broker name': 'COPO', 'sample name': '670b67e891c50845d5ed12fc', 'specimen_id': 'ERGA PR 7524 0475', 'collected_by': 'Paula Riccardi | Dora Aguín-Pombo | Hugo Miguel Silva | Gonçalo Gomes | Luena Marques | Emily Hartop', 'project name': 'ERGA', 'submitter id': '670b67e891c50845d5ed12fc', 'gal_sample_id': 'NOT PROVIDED', 'identified_by': 'LUENA SORAYA', 'organism part': 'WHOLE ORGANISM', 'sample same as': 'SAMEA116283135', 'collection date': '2024-07-27', 'scientific_name': 'Cyphopterum fauveli', 'specimen_voucher': 'UMACI 7524 0475 2', 'insdc center name': 'EarlhamInstitute', 'collector orcid id': '0000-0003-4850-7524 | 0000-0002-4471-7105 | 0009-0005-7396-6273 | 0009-0002-7388-7864 | 0009-0009-4235-6033 | 0000-0002-8598-9844', 'sample coordinator': 'PAULA RICCARDI', 'collecting institution': 'Museum für Naturkunde Berlin | University of Madeira | University of Madeira | University of Madeira | University of Madeira | Norwegian University of Science and Technology', 'identifier_affiliation': 'University of Madeira', 'voucher institution url': 'https://ror.org/0442zbe52', 'sample collection method': 'Sweeping', 'sample coordinator orcid id': '0000-0003-4850-7524', 'geographic location (latitude)': '32.745418', 'sample coordinator affiliation': 'Museum für Naturkunde Berlin', 'geographic location (longitude)': '-16.684796', 'geographic location (country and/or sea)': 'Portugal', 'geographic location (region and locality)': 'Madeira Island | Machico | Ponta de São Lourenço'}