Geotrichum candidum
TaxID: 1173061
Basic Information
Geotrichum candidum
Sour Rot of Citrus, hvit fragmentmugg
Geotrichum candidum is a fungus which is a member of the human microbiome, notably associated with skin, sputum, and faeces where it occurs in 25 C30% of specimens. It is common in soil and has been isolated from soil collected around the world, in all continents. G. candidum is the causative agent of the human disease geotrichosis and the plant disease sour rot which infects citrus fruits, tomatoes, carrots, and other vegetables. It can affect harvested fruit of durians such as Durio graveolens. G. candidum is used widely in the production of certain dairy products including rind cheeses such as Camembert, Saint-Nectaire, Reblochon, and others. The fungus can also be found in a Nordic yogurt-like product known as viili where it is responsible for the product's velvety texture. In a 2001 study, G. candidum was found to consume the polycarbonate found in CDs.
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Dipodascomycetes
Dipodascales
Dipodascaceae
Geotrichum
candidum
Undefined
Species
nan
d__Eukaryota;p__Ascomycota;c__Dipodascomycetes;o__Dipodascales;f__Dipodascaceae;g__Geotrichum;s__Geotrichum candidum
nan
Fungal organisms
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (1 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Solanum tuberosum | Host |
Quarantine Status (2 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (39 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Argentina | Present | — |
| Australia | Present | — |
| Austria | Present | — |
| Benin | Present | — |
| Canada | Present | — |
| Switzerland | Present | — |
| China | Present | — |
| Cameroon | Present | — |
| Cook Islands | Present | — |
| Colombia | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_001402995.1 | Scaffold | 24 | 27 | 1159 | - |
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New2.3_08062011 |
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Transcriptomes (1 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR6828656 | - | - | - | 4158175 | USSR: Moscow | |
|
PRJNA243259 SRX3784745 SRP040791 fungi G.candidum 3c RNA-seq Ion PGM Strain was cultivated for 7 days in medium containing: KH2PO4, 1 g/L; NaNO3, 1,5 g/L; (NH4)2SO4, 1,5 g/L; MgSO4 7H2O, 0,5 g/L; wheat bran, 40 g/L and filter paper 10 g/L. Culture samples from days 2, 3 and 7 were used for RNA extraction. We used Quick-RNA(TM) MicroPrep (Zymo Research, USA) for total RNA extraction and GenEluteTM mRNA Miniprep Kit (Sigma-Aldrich, USA) for mRNA purification. We used 1,8 ng of pooled mRNA for library preparation using Ion Total RNA-Seq Kit v2. Library was sequenced on IonTorrent PGM using Ion PGM Sequencing 400 Kit and Ion 318 Chip v2 (Thermo Fisher Scientific, USA). 3C {'strain': '3C', 'geo_loc_name': 'USSR: Moscow', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '1972', 'isolation_source': 'rotting rope', 'investigation_type': 'eukaryote'} |
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Literature
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