Agrobacterium vitis
TaxID: 373
Basic Information
Agrobacterium vitis
Crown Gall
Allorhizobium vitis is a plant pathogen that infects grapevines. The species is best known for causing a tumor known as crown gall disease. One of the virulent strains, A. vitis S4, is responsible both for crown gall on grapevines and for inducing a hypersensitive response in other plant species. Grapevines that have been affected by crown gall disease produce fewer grapes than unaffected plants. Though not all strains of A. vitis are tumorigenic, most strains can damage plant hosts. A. vitis shares many genetic and morphological characteristics with several Agrobacterium species, including A. tumefaciens. The two species have overlapping host ranges, and both A. vitis and A. tumefaciens may reduce the yield of infected crops. For this reason, research on A. vitis focuses on transmission and methods of control.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Alphaproteobacteria
Hyphomicrobiales
Rhizobiaceae
Agrobacterium
vitis
Unclassified
Species
nan
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;g__Agrobacterium;s__Agrobacterium vitis
nan
Prokaryotes
Photos (3 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (34 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Austria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Belgium | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Bulgaria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Switzerland | Regulated non-quarantine pest | 2019 |
| Cyprus | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Czechia | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Germany | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Denmark | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Spain | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Estonia | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_013337045.2 | Complete Genome | 6 | 3818 | 3818 | - |
|
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ASM1333704v2 |
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| GCF_001541345.2 | Scaffold | 5 | 999 | 999 | - |
|
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ASM154134v2 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR23016227 | - | - | - | 23070214 | - | |
|
PRJNA921868 SRX18971887 SRP416479 dRNA-Seq of BV3 dRNA-Seq T60/94 {'host': 'Grape', 'strain': 'T60/94', 'condition': 'MGYS_stationary', 'collected_by': 'Lucas Waldburger', 'tex_treatment': 'FALSE', 'biosamplemodel': 'Microbe, viral or environmental', 'isolation_source': 'environmental'} |
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| SRR23016224 | - | - | - | 37942238 | - | |
|
PRJNA921868 SRX18971890 SRP416479 dRNA-Seq of BV3 dRNA-Seq T60/94 {'host': 'Grape', 'strain': 'T60/94', 'condition': 'MOPS_succinate', 'collected_by': 'Lucas Waldburger', 'tex_treatment': 'TRUE', 'biosamplemodel': 'Microbe, viral or environmental', 'isolation_source': 'environmental'} |
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| SRR23016221 | - | - | - | 8005210 | - | |
|
PRJNA921868 SRX18971893 SRP416479 dRNA-Seq of BV3 dRNA-Seq T60/94 {'host': 'Grape', 'strain': 'T60/94', 'condition': 'MGYS_exponential', 'collected_by': 'Lucas Waldburger', 'tex_treatment': 'TRUE', 'biosamplemodel': 'Microbe, viral or environmental', 'isolation_source': 'environmental'} |
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Literature
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