Meloidogyne javanica
TaxID: 6303
Basic Information
Meloidogyne javanica
Javanese root-knot nematode, Sugarcane Nematode, root-knot nematode
Meloidogyne javanica is a species of plant-pathogenic nematodes. It is one of the tropical root-knot nematodes and a major agricultural pest in many countries. It has many hosts. Meloidogyne javanica reproduces by obligatory mitotic parthenogenesis (apomixis).
from Wikipedia
Taxonomic Information
Eukaryota
Nematoda
Chromadorea
Rhabditida
Meloidogynidae
Meloidogyne
javanica
nan
Species
nan
k__Eukaryota;p__Nematoda;c__Chromadorea;o__Rhabditida;f__Meloidogynidae;g__Meloidogyne;s__Meloidogyne javanica
nan
Nematodes
Photos (2 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (31 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Austria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Belgium | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Bulgaria | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Switzerland | Regulated non-quarantine pest | 2019 |
| Cyprus | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Czechia | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Germany | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Denmark | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Spain | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
| Estonia | RNQP ((EU) 2019/2072 Annex IV) | 2019 |
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_003693625.1 | Scaffold | 150 | 11 | 14 | - |
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ASM369362v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR28602071 | the second-stage juveniles (J2s) | - | - | 34724144 | USA: West Lafayette | |
|
PRJNA1098081 SRX24200620 SRP500562 general RNA-seq of Meloidogyne javanica: water treated for 6 hour mRNA was purified from total RNA using poly-T oligo-attached magnetic beads. After fragmentation, cDNA was synthesized using random primers followed by the second strand cDNA synthesis. The library was ready after end repair, A-tailing, adapter ligation, size selection, amplification, and purification. {'tissue': 'the second-stage juveniles (J2s)', 'geo_loc_name': 'USA: West Lafayette', 'biosamplemodel': 'Invertebrate', 'collection_date': '2022-10-30', 'isolation_source': 'J2s treated with sterilized water for 6 hour, replicate 2'} |
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| SRR28602070 | the second-stage juveniles (J2s) | - | - | 42798243 | USA: West Lafayette | |
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PRJNA1098081 SRX24200621 SRP500562 general RNA-seq of Meloidogyne javanica: water treated for 6 hour mRNA was purified from total RNA using poly-T oligo-attached magnetic beads. After fragmentation, cDNA was synthesized using random primers followed by the second strand cDNA synthesis. The library was ready after end repair, A-tailing, adapter ligation, size selection, amplification, and purification. {'tissue': 'the second-stage juveniles (J2s)', 'geo_loc_name': 'USA: West Lafayette', 'biosamplemodel': 'Invertebrate', 'collection_date': '2022-10-30', 'isolation_source': 'J2s treated with sterilized water for 6 hour, replicate 3'} |
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| SRR28602069 | the second-stage juveniles (J2s) | - | - | 33362074 | USA: West Lafayette | |
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PRJNA1098081 SRX24200622 SRP500562 general RNA-seq of Meloidogyne javanica: tomato root exudate treated for 6 hour mRNA was purified from total RNA using poly-T oligo-attached magnetic beads. After fragmentation, cDNA was synthesized using random primers followed by the second strand cDNA synthesis. The library was ready after end repair, A-tailing, adapter ligation, size selection, amplification, and purification. {'tissue': 'the second-stage juveniles (J2s)', 'geo_loc_name': 'USA: West Lafayette', 'biosamplemodel': 'Invertebrate', 'collection_date': '2022-10-30', 'isolation_source': 'J2s treated with tomato root exudate for 6 hour, replicate 1'} |
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DNA Barcodes (112 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| GBMTG4252-16 | BOLD:ADC3415 | ND6 | 396 | - | - | - | |
| GBMTG4252-16 | BOLD:ADC3415 | ND5-0 | 1471 | - | - | - | |
| GBMTG4252-16 | BOLD:ADC3415 | ND4L | 234 | - | - | - | |
| GBMTG4252-16 | BOLD:ADC3415 | ND4 | 1170 | - | - | - | |
| GBMTG4252-16 | BOLD:ADC3415 | ND3 | 312 | - | - | - | |
| GBMTG4252-16 | BOLD:ADC3415 | ND2 | 799 | - | - | - | |
| GBMTG4252-16 | BOLD:ADC3415 | ND1 | 847 | - | - | - | |
| GBMTG4252-16 | BOLD:ADC3415 | CYTB | 1012 | - | - | - | |
| GBMTG4252-16 | BOLD:ADC3415 | COXIII | 759 | - | - | - | |
| GBMTG4252-16 | BOLD:ADC3415 | COII | 690 | - | - | - |
Literature
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