Fusarium oxysporum f. sp. cepae
TaxID: 396571
Basic Information
Fusarium oxysporum f. sp. cepae
Basal Rot of Onion
nan
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Sordariomycetes
Hypocreales
Nectriaceae
Fusarium
oxysporum
f. sp. cepae
Under_Species
nan
d__Eukaryota;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Nectriaceae;g__Fusarium;s__Fusarium oxysporum
nan
Fungal organisms
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (5 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_003615075.1 | Scaffold | 51 | 147 | 147 | - |
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FoC_A23_v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR5115641 | - | - | - | 3859028 | not applicable | |
|
PRJNA338256 SRX2431012 SRP090441 fungi Fus2_4hrs_prelim Fus2 {'host': 'Allium cepa', 'isolate': 'Fus2', 'host_age': '4 hours post inoculation', 'env_biome': 'ENVO:00000469', 'replicate': 'not aplicable', 'experiment': '2', 'growth_med': 'Tap water agar', 'env_feature': 'ENVO:00000469', 'env_material': 'ENVO:02000009', 'host_disease': 'Fusarium basal rot isolate Fus2', 'host_genotype': 'Napoleon', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_date': 'not collected', 'forma_specialis': 'cepae', 'host_life_stage': 'Seedling'} |
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| SRR5115642 | - | - | - | 4229461 | not applicable | |
|
PRJNA338256 SRX2431013 SRP090441 fungi Fus2_48hrs_prelim Fus2 {'host': 'Allium cepa', 'isolate': 'Fus2', 'host_age': '48 hours post inoculation', 'env_biome': 'ENVO:00000469', 'replicate': 'not aplicable', 'experiment': '2', 'growth_med': 'Tap water agar', 'env_feature': 'ENVO:00000469', 'env_material': 'ENVO:02000009', 'host_disease': 'Fusarium basal rot isolate Fus2', 'host_genotype': 'Napoleon', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_date': 'not collected', 'forma_specialis': 'cepae', 'host_life_stage': 'Seedling'} |
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| SRR5115643 | - | - | - | 10641132 | not applicable | |
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PRJNA338256 SRX2431014 SRP090441 fungi Fus2_CzapekDox Fus2 {'isolate': 'Fus2', 'host_age': 'not aplicable', 'env_biome': 'ENVO:00000469', 'replicate': 'not aplicable', 'experiment': '1', 'growth_med': 'CzapekDox liquid media', 'env_feature': 'ENVO:00000469', 'env_material': 'ENVO:02000009', 'host_disease': 'not aplicable', 'host_genotype': 'not aplicable', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'collection_date': 'not collected', 'forma_specialis': 'cepae', 'host_life_stage': 'Seedling'} |
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Literature
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