Fusarium oxysporum f. sp. apii
TaxID: 224912
Basic Information
Fusarium oxysporum f. sp. apii
Yellows of Celery
nan
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Sordariomycetes
Hypocreales
Nectriaceae
Fusarium
oxysporum
f. sp. apii
Under_Species
nan
d__Eukaryota;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Nectriaceae;g__Fusarium;s__Fusarium oxysporum
nan
Fungal organisms
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (2 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_014843455.1 | Contig | 64 | 3526 | 3526 | - |
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UCD_FoaR2-207A_v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR11347473 | - | - | - | 6691906 | USA: Santa Maria, Santa Barbara Co., California | |
|
PRJNA591157 SRX7949432 SRP233267 fungi 3'QuantSeq of FoaR2 grown in yeast nitrogen broth RNA was extracted and 3' QuantSeq libraries (Lexogen) prepared as per manufacturer's recommendation 207.A {'host': 'Apium graveolens', 'ploidy': 'haploid', 'isolate': '207.A', 'lat_lon': '34.9331 N 120.5357 W', 'env_medium': 'plant matter [ENVO:01001121]', 'host_taxid': '117781', 'orgmod_note': 'race 2', 'propagation': 'asexual', 'geo_loc_name': 'USA: Santa Maria, Santa Barbara Co., California', 'host_disease': 'Fusarium yellows', 'pathogenicity': 'celery', 'trophic_level': 'heterotroph', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'estimated_size': '64.8 Mb', 'collection_date': '2010', 'env_broad_scale': 'agricultural field [ENVO:00000114]', 'env_local_scale': 'agricultural field [ENVO:00000114]', 'forma-specialis': 'apii', 'isolation_source': 'agricultural field', 'isol_growth_condt': 'doi.org/10.1094/PHYTO-04-16-0174-R', 'biotic_relationship': 'parasite', 'host_infra_specific_name': 'var. dulce'} |
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| SRR11347472 | - | - | - | 20894521 | USA: probably California | |
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PRJNA591157 SRX7949433 SRP233267 fungi 3'QuantSeq of crown tissue from celery cultivar "Tall Utah 52-70 R Improved" grown in soil infested with FoaR3 RNA was extracted and 3' QuantSeq libraries (Lexogen) prepared as per manufacturer's recommendation NRRL38295 {'host': 'Apium graveolens', 'ploidy': 'haploid', 'isolate': 'NRRL38295', 'env_medium': 'plant matter [ENVO:01001121]', 'host_taxid': '117781', 'orgmod_note': 'race 3', 'propagation': 'asexual', 'geo_loc_name': 'USA: probably California', 'host_disease': 'Fusarium yellows', 'pathogenicity': 'celery', 'trophic_level': 'heterotroph', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'estimated_size': '65.3 Mb', 'env_broad_scale': 'agricultural field [ENVO:00000114]', 'env_local_scale': 'agricultural field [ENVO:00000114]', 'forma-specialis': 'apii', 'isolation_source': 'agricultural field', 'isol_growth_condt': 'doi.org/10.1094/PHYTO-04-16-0174-R', 'biotic_relationship': 'parasite', 'host_infra_specific_name': 'var. dulce'} |
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| SRR11347463 | - | - | - | 5076816 | USA: Santa Maria, Santa Barbara Co., California | |
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PRJNA591157 SRX7949442 SRP233267 fungi 3'QuantSeq of FoaR2 grown in yeast nitrogen broth RNA was extracted and 3' QuantSeq libraries (Lexogen) prepared as per manufacturer's recommendation 207.A {'host': 'Apium graveolens', 'ploidy': 'haploid', 'isolate': '207.A', 'lat_lon': '34.9331 N 120.5357 W', 'env_medium': 'plant matter [ENVO:01001121]', 'host_taxid': '117781', 'orgmod_note': 'race 2', 'propagation': 'asexual', 'geo_loc_name': 'USA: Santa Maria, Santa Barbara Co., California', 'host_disease': 'Fusarium yellows', 'pathogenicity': 'celery', 'trophic_level': 'heterotroph', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'estimated_size': '64.8 Mb', 'collection_date': '2010', 'env_broad_scale': 'agricultural field [ENVO:00000114]', 'env_local_scale': 'agricultural field [ENVO:00000114]', 'forma-specialis': 'apii', 'isolation_source': 'agricultural field', 'isol_growth_condt': 'doi.org/10.1094/PHYTO-04-16-0174-R', 'biotic_relationship': 'parasite', 'host_infra_specific_name': 'var. dulce'} |
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Literature
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