Bombus caliginosus
TaxID: 207623
Basic Information
Bombus caliginosus
Fog-belt Bumble Bee, Obscure Bumble Bee
Bombus caliginosus, the obscure bumblebee, is a species of bumblebee native to the West Coast of the United States, where its distribution extends from Washington through Oregon to Southern California.
from Wikipedia
Taxonomic Information
Eukaryota
Arthropoda
Insecta
Hymenoptera
Apidae
Bombus
caliginosus
nan
Species
nan
k__Eukaryota;p__Arthropoda;c__Insecta;o__Hymenoptera;f__Apidae;g__Bombus;s__Bombus caliginosus
nan
Arthropods
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (1 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| United States of America | Quarantine pests | — |
Distribution (2 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Canada | Present | — |
| United States of America | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (0 records)
Data source: NCBI.
No genome records available.
Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR30633509 | head | adult | female | 65322740 | USA: CA, Marin County, Bolinas, Commonweal Gardens | |
|
PRJNA1159304 SRX26055419 SRP532057 insect Illumina sequencing of RNAseq library from head of Bombus caliginosus: adult female Total RNA was extracted with trizol + the zymo Directzol Magbead total RNA prep kit. We performed poly(A) selection during library prep via oligo dt with the NEB ultra II RNA library prep kit/modules. {'age': 'adult', 'sex': 'female', 'host': 'Raphanus raphanistrum subsp. sativus', 'caste': 'worker', 'tissue': 'head', 'lat_lon': '37.92564 N 122.721 W', 'altitude': "400'", 'dev_stage': 'adult', 'collected_by': 'Nina Sokolov', 'geo_loc_name': 'USA: CA, Marin County, Bolinas, Commonweal Gardens', 'sample_notes': 'Bombus_caliginosus_COMM_06132023_B14_head', 'identified_by': 'Nina Sokolov', 'biosamplemodel': 'Invertebrate', 'collection_date': '2023-06-13', 'specimen_voucher': 'COMM0613202314', 'biomaterial_provider': "Nina Sokolov, Boots' Lab, University of California, Berkeley. Valley Life Sciences Building, Harmon Way, Berkeley, CA, 94720"} |
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| SRR30633508 | thorax | adult | female | 53685505 | USA: CA, Marin County, Bolinas, Commonweal Gardens | |
|
PRJNA1159304 SRX26055420 SRP532057 insect Illumina sequencing of RNAseq library from thorax of Bombus caliginosus: adult female Total RNA was extracted with trizol + the zymo Directzol Magbead total RNA prep kit. We performed poly(A) selection during library prep via oligo dt with the NEB ultra II RNA library prep kit/modules. {'age': 'adult', 'sex': 'female', 'host': 'Raphanus raphanistrum subsp. sativus', 'caste': 'worker', 'tissue': 'thorax', 'lat_lon': '37.92564 N 122.721 W', 'altitude': "400'", 'dev_stage': 'adult', 'collected_by': 'Nina Sokolov', 'geo_loc_name': 'USA: CA, Marin County, Bolinas, Commonweal Gardens', 'sample_notes': 'Bombus_caliginosus_COMM_06132023_B14_thorax', 'identified_by': 'Nina Sokolov', 'biosamplemodel': 'Invertebrate', 'collection_date': '2023-06-13', 'specimen_voucher': 'COMM0613202314', 'biomaterial_provider': "Nina Sokolov, Boots' Lab, University of California, Berkeley. Valley Life Sciences Building, Harmon Way, Berkeley, CA, 94720"} |
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| SRR30633507 | abdomen | adult | female | 64503519 | USA: CA, Marin County, Bolinas, Commonweal Gardens | |
|
PRJNA1159304 SRX26055421 SRP532057 insect Illumina sequencing of RNAseq library from abdomen of Bombus caliginosus: adult female Total RNA was extracted with trizol + the zymo Directzol Magbead total RNA prep kit. We performed poly(A) selection during library prep via oligo dt with the NEB ultra II RNA library prep kit/modules. {'age': 'adult', 'sex': 'female', 'host': 'Raphanus raphanistrum subsp. sativus', 'caste': 'worker', 'tissue': 'abdomen', 'lat_lon': '37.92564 N 122.721 W', 'altitude': "400'", 'dev_stage': 'adult', 'collected_by': 'Nina Sokolov', 'geo_loc_name': 'USA: CA, Marin County, Bolinas, Commonweal Gardens', 'sample_notes': 'Bombus_caliginosus_COMM_06132023_B14_abdomen', 'identified_by': 'Nina Sokolov', 'biosamplemodel': 'Invertebrate', 'collection_date': '2023-06-13', 'specimen_voucher': 'COMM0613202314', 'biomaterial_provider': "Nina Sokolov, Boots' Lab, University of California, Berkeley. Valley Life Sciences Building, Harmon Way, Berkeley, CA, 94720"} |
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DNA Barcodes (5 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| WASPS1055-17 | BOLD:ADH5042 | COI-5P | 658 | United States | 2007-06-30 | 44.5961, -123.585 | |
| GMSVJ3088-24 | BOLD:ADH5042 | COI-5P | 658 | United States | 2023-08-26 | 37.262226, -122.32655 | |
| CIOSH34549-24 | BOLD:ADH5042 | COI-5P | 653 | United States | 2023-06-25 | 37.97005, -122.7317 | |
| CIOSH18718-23 | BOLD:ADH5042 | COI-5P | 652 | United States | 2023-06-06 | 37.97005, -122.7317 | |
| BEECC847-09 | - | COI-5P | 407 | United States | - | 36.498, -121.176 |
Literature
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