Ceratobasidium theobromae
TaxID: 1582974
Basic Information
Ceratobasidium theobromae
Fungus
nan
from Wikipedia
Taxonomic Information
Eukaryota
Basidiomycota
Agaricomycetes
Cantharellales
Ceratobasidiaceae
Ceratobasidium
theobromae
Undefined
Species
nan
d__Eukaryota;p__Basidiomycota;c__Agaricomycetes;o__Cantharellales;f__Ceratobasidiaceae;g__Ceratobasidium;s__Ceratobasidium theobromae
nan
Fungal organisms
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (4 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Lonicera japonica | Host |
| Manihot esculenta | Host |
| Persea americana | Host |
| Theobroma cacao | Host |
Quarantine Status (9 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_009078325.1 | Contig | 31 | 86 | 86 | - |
|
|
|
ASM907832v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR28539640 | - | - | - | 14078478 | Laos | |
|
PRJNA1076853 SRX24139668 SRP492027 fungi Manihot esculenta RNAseq RNA extraction was performed using 200-400 mg of petioles and CTAB (N-Cetyl-N,N,N-Trimethyl-Ammonium Bromide. Merck) as previously described (Jimnez et al., 2021) and quantified using Nanodrop 2000c spectrophotometer (ThermoFisher, USA). Quality was assessed with RNA OD260/280 ratio OD230/280 and visualized using 1% agarose gel electrophoresis. Total RNA was sequenced with Illumina NovaSeq 6000 platform (Novogene, USA) using a 150 bp paired-end whole transcriptome sequencing protocol. Manihot esculenta {'isolate': 'Manihot esculenta', 'lat_lon': '18.15002311 N 102.73502093 E', 'collected_by': 'Khamla Xaiyavong', 'geo_loc_name': 'Laos', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2024', 'isolation_source': 'Manihot esculenta petioles with CWBD symptoms'} |
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| SRR28539639 | - | - | - | 19502188 | Laos | |
|
PRJNA1076853 SRX24139669 SRP492027 fungi Manihot esculenta RNAseq RNA extraction was performed using 200-400 mg of petioles and CTAB (N-Cetyl-N,N,N-Trimethyl-Ammonium Bromide. Merck) as previously described (Jimnez et al., 2021) and quantified using Nanodrop 2000c spectrophotometer (ThermoFisher, USA). Quality was assessed with RNA OD260/280 ratio OD230/280 and visualized using 1% agarose gel electrophoresis. Total RNA was sequenced with Illumina NovaSeq 6000 platform (Novogene, USA) using a 150 bp paired-end whole transcriptome sequencing protocol. Manihot esculenta {'isolate': 'Manihot esculenta', 'lat_lon': '18.15002311 N 102.73502093 E', 'collected_by': 'Khamla Xaiyavong', 'geo_loc_name': 'Laos', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2024', 'isolation_source': 'Manihot esculenta petioles with CWBD symptoms'} |
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| SRR28539638 | - | - | - | 31603845 | Laos | |
|
PRJNA1076853 SRX24139670 SRP492027 fungi Manihot esculenta RNAseq RNA extraction was performed using 200-400 mg of petioles and CTAB (N-Cetyl-N,N,N-Trimethyl-Ammonium Bromide. Merck) as previously described (Jimnez et al., 2021) and quantified using Nanodrop 2000c spectrophotometer (ThermoFisher, USA). Quality was assessed with RNA OD260/280 ratio OD230/280 and visualized using 1% agarose gel electrophoresis. Total RNA was sequenced with Illumina NovaSeq 6000 platform (Novogene, USA) using a 150 bp paired-end whole transcriptome sequencing protocol. Manihot esculenta {'isolate': 'Manihot esculenta', 'lat_lon': '18.15002311 N 102.73502093 E', 'collected_by': 'Khamla Xaiyavong', 'geo_loc_name': 'Laos', 'biosamplemodel': 'Pathogen.env', 'collection_date': '2024', 'isolation_source': 'Manihot esculenta petioles with CWBD symptoms'} |
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Literature
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