Echinochloa colona
TaxID: 90396
Basic Information
Echinochloa colona
Awnless Barnyard Grass, Jungle Rice, jungle rice
Echinochloa colona, commonly known as jungle rice, wild rice, deccan grass, jharua or awnless barnyard grass, is a type of wild grass originating from tropical Asia. It was formerly classified as a species of Panicum. It is the wild ancestor of the cultivated cereal crop Echinochloa frumentacea, sawa millet. Some taxonomists treat the two taxa as one species, in which case the domesticated forms may also be referred to as E. colona.
from Wikipedia
Taxonomic Information
Eukaryota
Streptophyta
Magnoliopsida
Poales
Poaceae
Echinochloa
colona
Unclassified
Species
nan
d__Eukaryota;p__Streptophyta;c__Magnoliopsida;o__Poales;f__Poaceae;g__Echinochloa;s__Echinochloa colona
nan
Weeds
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (1 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Paraguay | Quarantine pests | — |
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (0 records)
Data source: NCBI.
No genome records available.
Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR27940334 | leaf | tillering stage | - | 22258128 | China:Zhejiang Province | |
|
PRJNA1074860 SRX23597316 SRP489277 weed RNA-seq of leaf Total RNA was extracted and purified using TRIzol (Invitrogen) and then libraries were constructed according to the manufacturers procedures for RNA sequencing. HB007_RNA-seq {'tissue': 'leaf', 'isolate': 'HB007_RNA-seq', 'dev_stage': 'tillering stage', 'geo_loc_name': 'China:Zhejiang Province', 'biosamplemodel': 'Plant', 'collection_date': '2022-08-19'} |
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| SRR27940333 | leaf | tillering stage | - | 22900347 | China:Zhejiang Province | |
|
PRJNA1074860 SRX23597317 SRP489277 weed RNA-seq of leaf Total RNA was extracted and purified using TRIzol (Invitrogen) and then libraries were constructed according to the manufacturers procedures for RNA sequencing. HB008_RNA-seq {'tissue': 'leaf', 'isolate': 'HB008_RNA-seq', 'dev_stage': 'tillering stage', 'geo_loc_name': 'China:Zhejiang Province', 'biosamplemodel': 'Plant', 'collection_date': '2022-08-19'} |
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| SRR32859704 | Leaves | Vegetative | - | 7140873 | Iraq: Karbala | |
|
PRJNA1241997 SRX28141237 SRP573108 weed RNA-Seq of Herbicide-Resistant E. colona Leaf Tissue Total RNA was extracted, cDNA, PCR, library preparation and sequenced Wild type {'age': 'One month', 'tissue': 'Leaves', 'isolate': 'Karbala-1', 'cultivar': 'Wild type', 'dev_stage': 'Vegetative', 'phenotype': 'Herbicide-resistant', 'treatment': 'Herbicide application at field dose', 'geo_loc_name': 'Iraq: Karbala', 'biosamplemodel': 'Plant', 'collection_date': '2024', 'growth_protocol': 'Field-grown, full sunlight, irrigated', 'isolation_source': 'Field-grown herbicide-treated rice paddies'} |
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DNA Barcodes (43 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| UHURU1381-15 | - | trnL-F | 579 | Kenya | 2014-09-12 | 0.444, 36.855 | |
| UHURU1357-15 | - | trnL-F | 580 | Kenya | 2014-09-12 | 0.444, 36.855 | |
| UHURU1333-15 | - | trnL-F | 553 | Kenya | 2014-09-12 | 0.444, 36.855 | |
| UHURU1309-15 | - | trnL-F | 580 | Kenya | 2014-09-12 | 0.444, 36.855 | |
| SDH2401-14 | - | rbcLa | 552 | United States | 1959-08-19 | 32.731, -117.147 | |
| SAFH121-10 | - | rbcLa | 519 | Namibia | 1999-02-26 | -20.58083, 19.81111 | |
| PNG017-18 | - | trnL-F | 589 | Mozambique | 2015-05-14 | -18.9043, 34.37668 | |
| MXBZI226-10 | - | rbcLa | 552 | Mexico | 1998-10-02 | 15.838, -95.962 | |
| MKTRT121-12 | - | rbcLa | 552 | United States | 1966-09-23 | - | |
| KNPB542-10 | - | rbcLa | 552 | South Africa | 1980-10-01 | -24.98333, 31.58333 |
Literature
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Failed to fetch literature