Amaranthus tuberculatus
TaxID: 277990
Basic Information
Amaranthus tuberculatus
Rough-fruit Amaranth, Tall Waterhemp
Amaranthus tuberculatus, commonly known as roughfruit amaranth, rough-fruited water-hemp, tall waterhemp, or common waterhemp, is a species of flowering plant. It is a summer annual broadleaf with a germination period that lasts several months. Tall waterhemp has been reported as a weed in 40 of 50 U.S. states.
from Wikipedia
Taxonomic Information
Eukaryota
Streptophyta
Magnoliopsida
Caryophyllales
Amaranthaceae
Amaranthus
tuberculatus
Unclassified
Species
nan
d__Eukaryota;p__Streptophyta;c__Magnoliopsida;o__Caryophyllales;f__Amaranthaceae;g__Amaranthus;s__Amaranthus tuberculatus
nan
Weeds
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (3 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Argentina | Absent | 2019 |
| EPPO A2 | Present | — |
| United States of America | Quarantine pests | — |
Distribution (27 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Australia | Present | — |
| Austria | Absent | — |
| Belgium | Transient | — |
| Bosnia and Herzegovina | Present | — |
| Canada | Present | |
| Switzerland | Absent | — |
| Czechia | Transient | — |
| Germany | Transient | — |
| Ecuador | Present | — |
| Spain | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_054443075.1 | Chromosome | 585 | 35797 | 35804 | - |
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Amaranthus_tuberculatus.hap2.v01 |
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| GCA_000180655.1 | Contig | 4 | - | - | - |
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ASM18065v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR33792552 | leaf | reproductive | female | 39905915 | Canada: Ontario | |
|
PRJNA1271085 SRX29014303 SRP589312 weed RNAseq of Amaranthus tuberculatus: leaf RNA was extracted using RNAeasy plant kits in the Wright Lab, and libraries were prepared and sequenced at the Sickkids, Toronto sequencing facility on Illumina single-end 100bp technology. Natural_8 {'sex': 'female', 'tissue': 'leaf', 'isolate': 'Natural_8', 'lat_lon': '42.75516 N 81.47353 W', 'dev_stage': 'reproductive', 'geo_loc_name': 'Canada: Ontario', 'biosamplemodel': 'Plant', 'collection_date': '2018'} |
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| SRR33792551 | leaf | reproductive | male | 42718103 | Canada: Ontario | |
|
PRJNA1271085 SRX29014304 SRP589312 weed RNAseq of Amaranthus tuberculatus: leaf RNA was extracted using RNAeasy plant kits in the Wright Lab, and libraries were prepared and sequenced at the Sickkids, Toronto sequencing facility on Illumina single-end 100bp technology. Natural_9 {'sex': 'male', 'tissue': 'leaf', 'isolate': 'Natural_9', 'lat_lon': '42.75516 N 81.47353 W', 'dev_stage': 'reproductive', 'geo_loc_name': 'Canada: Ontario', 'biosamplemodel': 'Plant', 'collection_date': '2018'} |
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| SRR33792550 | leaf | reproductive | male | 35225363 | Canada: Ontario | |
|
PRJNA1271085 SRX29014305 SRP589312 weed RNAseq of Amaranthus tuberculatus: leaf RNA was extracted using RNAeasy plant kits in the Wright Lab, and libraries were prepared and sequenced at the Sickkids, Toronto sequencing facility on Illumina single-end 100bp technology. Natural_10 {'sex': 'male', 'tissue': 'leaf', 'isolate': 'Natural_10', 'lat_lon': '42.75516 N 81.47353 W', 'dev_stage': 'reproductive', 'geo_loc_name': 'Canada: Ontario', 'biosamplemodel': 'Plant', 'collection_date': '2018'} |
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DNA Barcodes (4 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| GBITS57093-21 | - | ITS | 627 | - | - | - | |
| GBITS57092-21 | - | ITS | 661 | - | - | - | |
| GBITS15974-21 | - | ITS | 629 | - | - | - | |
| BBYUK195-12 | - | rbcLa | 552 | Canada | 2002-08-26 | 42.823, -81.858 |
Literature
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