Peach latent mosaic viroid
TaxID: 12894
Basic Information
Peach latent mosaic viroid
Peach Latent Mosaic Viroid
Peach latent mosaic viroid (binomial name Pelamoviroid latenspruni)(PLMVd) is a species of the genus Pelamoviroid, which belongs to the family Avsunviroidae. This family is characterized as having chloroplastic viroids with hammerhead ribozymes. In other words, these viruses are known to localize within the chloroplasts of plant cells and utilize hammerhead ribozymes to mediate self-cleavage and ligation of replication intermediates. Peach latent mosaic viroid was first described in the 1980s in Spain by a group of scientists.It is present in all peach- and nectarine-producing areas of the world including Europe, Asia, North America and South America and the frequency of naturally occurring infection is high. Before the development of symptoms the disease is latent in peach trees for approximately 5–7 years. The symptoms of the disease include necrosis of buds, delayed shoot development, necrotic branches, premature ageing of trees, flower streaking, ripening deformations, enlarged rounded stones, circular discolored areas on the fruit skin and in some cases mosaic, blotch, vein banding or calico appearance on infected leaves. An interesting biochemical property is that PLMVd has reduced solubility in highly saline conditions (e.g. 2 M LiCl), which is thought to relate to its branched structure. Some studies suggest the existence of a 2′,5′-phosphodiester bond in circular forms, possibly contributing to structural stability and influencing cleavage/ligation balance.
from Wikipedia
Taxonomic Information
unclassified
unclassified
unclassified
unclassified
Avsunviroidae
Pelamoviroid
Pelamoviroid latenspruni
nan
No Rank
nan
k__unclassified;p__unclassified;c__unclassified;o__unclassified;f__Avsunviroidae;g__Pelamoviroid;s__Pelamoviroid latenspruni
nan
Viruses/Viroids
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (13 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Cydonia oblonga | Host |
| Malus domestica | Host |
| Mangifera indica | Host |
| Prunus armeniaca | Host |
| Prunus avium | Host |
| Prunus domestica | Host |
| Prunus dulcis | Host |
| Prunus mume | Host |
| Prunus persica | Host |
| Prunus salicina | Host |
Quarantine Status (9 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Armenia | Absent | — |
| Belarus | Absent | — |
| Georgia | Absent | — |
| Iran | Absent | — |
| New Caledonia | Quarantine pests | — |
| Peru | Absent | — |
| Russian Federation | Absent | — |
| Thailand | Quarantine pests | — |
| Turkey | Unknow | — |
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_000850605.1 | Complete Genome | - | - | - | - |
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ViralProj14772 |
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Transcriptomes (1 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR5377140 | - | - | - | 974165 | United Kingdom | |
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PRJNA380230 SRX2672438 SRP102461 general RNA from PLMVd infected plant sample Ribosomal RNA was depleted from the purified total RNA and sequencing libraries were prepared using the ScriptSeq Complete Kit (Illumina) FERA {'host': 'Prunus sp.', 'isolate': 'FERA', 'sample_type': 'plant sample', 'geo_loc_name': 'United Kingdom', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2016'} |
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Literature
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