Sigmodon hispidus
TaxID: 42415
Basic Information
Sigmodon hispidus
Hispid Cotton Rat, hispid cotton rat
The hispid cotton rat (Sigmodon hispidus) is a rat long thought to occur in parts of South America, Central America, and southern North America. However, recent taxonomic revisions, based on mitochondrial DNA sequence data, have split this widely distributed species into three separate species (S. hispidus, S. toltecus, and S. hirsutus). The distribution of S. hispidus ranges from Arizona in the west to Virginia to the east and from the Platte River in Nebraska in the north to, likely, the Rio Grande in the south, where it meets the northern edge of the distribution of S. toltecus (formerly S. h. toltecus). Adult size is total length 202 C340 mm (8.0 C13.4 in); tail 87 C122 mm (3.4 C4.8 in), frequently broken or stubbed; hind foot 29 C35 mm (1.1 C1.4 in); ear 16 C20 mm (0.63 C0.79 in); mass 50 C250 g (1.8 C8.8 oz). They have been used as laboratory animals.
from Wikipedia
Taxonomic Information
Eukaryota
Chordata
Mammalia
Rodentia
Cricetidae
Sigmodon
hispidus
nan
Species
nan
k__Eukaryota;p__Chordata;c__Mammalia;o__Rodentia;f__Cricetidae;g__Sigmodon;s__Sigmodon hispidus
nan
Vertebrates
Photos (5 photos)
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (1 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Mexico | Quarantine pests | — |
Distribution (12 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Belize | Present | — |
| China | Present | — |
| Colombia | Present | — |
| Costa Rica | Present | — |
| Ecuador | Present | — |
| Guatemala | Present | — |
| Honduras | Present | — |
| Mexico | Present | — |
| Nicaragua | Present | — |
| Panama | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_004025045.1 | Scaffold | 2730 | 67 | 101 | - |
|
|
|
SigHis_v1_BIUU |
|||||||
Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR30479196 | liver rep4 | - | female | 23388448 | China: Beijing | |
|
PRJNA1149290 SRX25903961 SRP529506 general RNA-Seq of Sigmodon hispidus: adult female liver blank {'age': '27 week', 'sex': 'female', 'tissue': 'liver rep4', 'collected_by': 'NIFDC', 'geo_loc_name': 'China: Beijing', 'biosamplemodel': 'Model organism or animal', 'collection_date': '2024-06'} |
||||||
| SRR30479195 | spleen rep1 | - | female | 23696493 | China: Beijing | |
|
PRJNA1149290 SRX25903962 SRP529506 general RNA-Seq of Sigmodon hispidus: adult female spleen blank {'age': '27 week', 'sex': 'female', 'tissue': 'spleen rep1', 'collected_by': 'NIFDC', 'geo_loc_name': 'China: Beijing', 'biosamplemodel': 'Model organism or animal', 'collection_date': '2024-06'} |
||||||
| SRR30479194 | spleen rep2 | - | female | 23664599 | China: Beijing | |
|
PRJNA1149290 SRX25903963 SRP529506 general RNA-Seq of Sigmodon hispidus: adult female spleen blank {'age': '27 week', 'sex': 'female', 'tissue': 'spleen rep2', 'collected_by': 'NIFDC', 'geo_loc_name': 'China: Beijing', 'biosamplemodel': 'Model organism or animal', 'collection_date': '2024-06'} |
||||||
DNA Barcodes (117 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| TOPO659-10 | BOLD:AAA4850 | COI-5P | 627 | Mexico | 2008-09-03 | 21.217, -87.183 | |
| TOPO658-10 | BOLD:AAA4850 | COI-5P | 652 | Mexico | 2010-06-16 | 17.83, -91.249 | |
| TOPO657-10 | BOLD:AAA4852 | COI-5P | 632 | Mexico | 1998-09-24 | 16.7, -92.6 | |
| MYPMX049-10 | BOLD:AAA1671 | COI-5P | 435 | Mexico | 1996-06-16 | 19.3, -87.548 | |
| MYPMX046-10 | BOLD:AAA1671 | COI-5P | 435 | Mexico | 1998-07-04 | 18.124, -89.816 | |
| MYPMX045-10 | BOLD:AAA1671 | COI-5P | 657 | Mexico | 1995-03-28 | 19.992, -87.471 | |
| MAMN9018-23 | BOLD:AAA4853 | COI-5P | 657 | United States | - | 39.047, -95.202 | |
| MAMN9007-23 | BOLD:AAA4853 | COI-5P | 657 | United States | - | 39.052, -95.194 | |
| MAMN9001-23 | BOLD:AAA4853 | COI-5P | 657 | United States | - | 39.047, -95.202 | |
| MAMN8648-23 | BOLD:AAA4853 | COI-5P | 657 | United States | - | 35.419, -99.051 |
Literature
Fetching literature from NCBI PubMed...
Failed to fetch literature