Physalis ixocarpa

Physalis ixocarpa_P19

For RNA extractions we collected three mature leaves from all selected plants and collected root samples from a subset of 15 TA producing species and two Solanum species. The material was snap-freezed in liquid nitrogen and stored at -80C until extraction. For RNA extractions we pooled organ from the tree individuals to obtain a single pool per species. RNA was extracted with 1:1 trizolchloroform and precipitated in isopropanol and 75% ethanol. Quality control was performed by (1) electrophoresis in a 2% agarose gel, (2) evaluation of 260/280 and 260/230 absorbance ratios in a Nanodrop device, and (3) RNA quantification in Qubit. Samples that passed quality controls were sent to NovoGene for RNAseq genotyping using paired-end 150 bp libraries and an Illumina NovaSeq 6000 S4 Sequencing System.

{'tissue': 'Seedling', 'isolate': 'Physalis ixocarpa_P19', 'lat_lon': '4.63573454 N 74.08933962 W', 'dev_stage': 'not provided', 'sample_type': 'tissue sample', 'collected_by': 'Santiago Perez Moreno', 'geo_loc_name': 'Colombia:Bogota,Bogota, Crecimiento en Invernadero Agronomia - UNAL', 'biosamplemodel': 'Plant', 'collection_date': '2023-06-01', 'specimen_voucher': 'SPM 3', 'biomaterial_provider': 'Genomica Evolutiva del Metabolismo Especializado'}