Pseudomonas syringae pv. actinidiae
TaxID: 103796
Basic Information
Pseudomonas syringae pv. actinidiae
Causal Agent of Bacterial Canker of Kiwifruit
Pseudomonas syringae is a rod-shaped, Gram-negative bacterium with polar flagella. As a plant pathogen, it can infect a wide range of species, and exists as over 50 different pathovars, all of which are available to researchers from international culture collections such as the NCPPB, ICMP, and others. Pseudomonas syringae is a member of the genus Pseudomonas, and based on 16S rRNA analysis, it has been placed in the P. syringae group. It is named after the lilac tree (Syringa vulgaris), from which it was first isolated. A phylogenomic analysis of 494 complete genomes from the entire Pseudomonas genus showed that P. syringae does not form a monophyletic species in the strict sense, but a wider evolutionary group that also included other species as well, such as P. avellanae, P. savastanoi, P. amygdali, and P. cerasi. Pseudomonas syringae tests negative for arginine dihydrolase and oxidase activity, and forms the polymer levan on sucrose nutrient agar. Many, but not all, strains secrete the lipopeptide plant toxin syringomycin, and it owes its yellow fluorescent appearance when cultured in vitro on King's B medium to production of the siderophore pyoverdin. Pseudomonas syringae also produces ice nucleation active (INA) proteins which cause water (in plants) to freeze at fairly high temperatures (?1.8 to ?3.8 C (28.8 to 25.2 F)), resulting in injury. Since the 1970s, P. syringae has been implicated as an atmospheric biological ice nucleator, with airborne bacteria serving as cloud condensation nuclei. Recent evidence has suggested the species plays a larger role than previously thought in producing rain and snow. They have also been found in the cores of hailstones, aiding in bioprecipitation. These INA proteins are also used in making artificial snow. Pseudomonas syringae pathogenesis is dependent on effector proteins secreted into the plant cell by the bacterial type III secretion system. Nearly 60 different type III effector families encoded by hop genes have been identified in P. syringae. Type III effectors contribute to pathogenesis chiefly through their role in suppressing plant defense. Owing to early availability of the genome sequence for three P. syringae strains and the ability of selected strains to cause disease on well-characterized host plants, including Arabidopsis thaliana, Nicotiana benthamiana, and the tomato, P. syringae has come to represent an important model system for experimental characterization of the molecular dynamics of plant-pathogen interactions.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
syringae
pv. actinidiae
Under_Species
nan
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas syringae
nan
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (14 host plants)
Data sources: EPPO Global Database and relevant literature.
| Scientific Name | Status |
|---|---|
| Actinidia | Host |
| Actinidia arguta | Host |
| Actinidia chinensis | Host |
| Actinidia deliciosa | Host |
| Actinidia eriantha | Host |
| Actinidia hemsleyana | Host |
| Actinidia kolomikta | Host |
| Alternanthera philoxeroides | Host |
| Amaranthus | Host |
| Broussonetia papyrifera | Host |
Quarantine Status (39 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Argentina | Absent | 2019 |
| Austria | RNQP ((EU) 2019/2072 Annex IV) | 2021 |
| Belgium | RNQP ((EU) 2019/2072 Annex IV) | 2021 |
| Bulgaria | RNQP ((EU) 2019/2072 Annex IV) | 2021 |
| Chile | A1 list | 2024 |
| Cyprus | RNQP ((EU) 2019/2072 Annex IV) | 2021 |
| Czechia | RNQP ((EU) 2019/2072 Annex IV) | 2021 |
| Germany | RNQP ((EU) 2019/2072 Annex IV) | 2021 |
| Denmark | RNQP ((EU) 2019/2072 Annex IV) | 2021 |
| Egypt | Abesent | 2018 |
Distribution (25 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Argentina | Present | — |
| Australia | Present | |
| Austria | Absent | — |
| Belgium | Absent | — |
| Switzerland | Present | — |
| Chile | Present | — |
| China | Present | |
| Germany | Absent | — |
| Spain | Present | — |
| Estonia | Absent, | — |
Genomes (3 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_001913215.1 | Complete Genome | 6 | 6665 | 6665 | - |
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ASM191321v1 |
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| GCF_001910465.1 | Scaffold | 6 | 46 | 46 | - |
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ASM191046v1 |
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| GCF_001270005.1 | Contig | 6 | 50 | 50 | - |
|
|
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ASM127000v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR31969293 | - | - | - | 7438380 | - | |
|
PRJNA1209580 SRX27324661 SRP556774 GSM8728342: KO4700.2_bio rep 2; Pseudomonas syringae pv. actinidiae; RNA-Seq {'pathovar': 'actinidiae', 'cell type': 'C_4700 Knockout', 'source_name': 'C_4700 Knockout'} |
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| SRR31969292 | - | - | - | 12571778 | - | |
|
PRJNA1209580 SRX27324662 SRP556774 GSM8728343: KO4700.3_bio rep 3; Pseudomonas syringae pv. actinidiae; RNA-Seq {'pathovar': 'actinidiae', 'cell type': 'C_4700 Knockout', 'source_name': 'C_4700 Knockout'} |
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| SRR35355749 | - | - | - | 16071463 | - | |
|
PRJNA1327490 SRX30450323 SRP619272 Psa treated with sterile water rRNA depletion and RNA fragment Leaves {'host': 'Kiwifruit', 'strain': 'JF8', 'isolate': 'Leaves', 'sample_type': 'Cell culture', 'geo_loc_name': 'China: Anhui', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2020'} |
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Literature
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