Apodemus agrarius
TaxID: 39030
Basic Information
Apodemus agrarius
Brandmaus, Eurasian field mouse, Striped Field Mouse
The striped field mouse (Apodemus agrarius) is a rodent in the family Muridae. The range of this species stretches from Eastern Europe to Eastern Asia.
from Wikipedia
Taxonomic Information
Eukaryota
Chordata
Mammalia
Rodentia
Muridae
Apodemus
agrarius
nan
Species
nan
k__Eukaryota;p__Chordata;c__Mammalia;o__Rodentia;f__Muridae;g__Apodemus;s__Apodemus agrarius
nan
Vertebrates
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (1 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Moldova | Quarantine pests | — |
Distribution (34 countries)
Data Sources: EPPO Global Database and GBIF.
| Country | Status | State |
|---|---|---|
| Austria | Present | — |
| Bulgaria | Present | — |
| Bosnia and Herzegovina | Present | — |
| Belarus | Present | — |
| China | Present | — |
| Czechia | Present | — |
| Germany | Present | — |
| Denmark | Present | — |
| Estonia | Present | — |
| Finland | Present | — |
Distribution Map (Latitude and longitude coordinates sourced from GBIF.)
Download CSVGenomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_964023405.1 | Chromosome | 2613 | 35188 | 119125 | - |
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mApoAgr2.1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR32264098 | mixed | - | - | 4374650 | China: Shaanxi | |
|
PRJNA1218924 SRX27601483 SRP562169 general RNA-seq of Apodemus agrarius:sample3-CC The QIAseq FastSelect reagent was employed for the removal of ribosomal RNA, while the QIAseq Stranded RNA Library Kit was utilised for the construction of the library. {'age': 'not collected', 'tissue': 'mixed', 'replicate': 'replicate-13', 'geo_loc_name': 'China: Shaanxi', 'biosamplemodel': 'Model organism or animal', 'collection_date': '2023-11-01'} |
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| SRR32264097 | mixed | - | - | 3405390 | China: Shaanxi | |
|
PRJNA1218924 SRX27601484 SRP562169 general RNA-seq of Apodemus agrarius:sample3-LT The QIAseq FastSelect reagent was employed for the removal of ribosomal RNA, while the QIAseq Stranded RNA Library Kit was utilised for the construction of the library. {'age': 'not collected', 'tissue': 'mixed', 'replicate': 'replicate-3', 'geo_loc_name': 'China: Shaanxi', 'biosamplemodel': 'Model organism or animal', 'collection_date': '2023-03-01'} |
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| SRR32264096 | mixed | - | - | 8299305 | China: Shaanxi | |
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PRJNA1218924 SRX27601485 SRP562169 general RNA-seq of Apodemus agrarius:sample3-CA The QIAseq FastSelect reagent was employed for the removal of ribosomal RNA, while the QIAseq Stranded RNA Library Kit was utilised for the construction of the library. {'age': 'not collected', 'tissue': 'mixed', 'replicate': 'replicate-1.3', 'geo_loc_name': 'China: Shaanxi', 'biosamplemodel': 'Model organism or animal', 'collection_date': '2023-03-01'} |
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DNA Barcodes (257 records)
View allData source: BOLD.
| Process ID | BIN | Marker | Length | Country | Date | Lat/Lon | Sequence |
|---|---|---|---|---|---|---|---|
| TPZMM027-21 | BOLD:AAA8775 | COI-5P | 681 | Taiwan | 2008-10-11 | 24.143, 120.573 | |
| TPZMM026-21 | BOLD:AAA8775 | COI-5P | 679 | Taiwan | 2009-01-16 | 23.671, 121.435 | |
| TPZMM025-21 | BOLD:AAA8775 | COI-5P | 686 | Taiwan | 2001-05-18 | 24.614, 120.792 | |
| SKMZM545-08 | BOLD:AAA8775 | COI-5P | 657 | Russia | 2007-10-27 | 55.87, 37.87 | |
| SKMZM329-07 | BOLD:AAA8775 | COI-5P | 654 | Russia | 2007-08-20 | 53.81, 39.53 | |
| SKMZM328-07 | BOLD:AAA8775 | COI-5P | 654 | Russia | 2007-08-20 | 53.81, 39.53 | |
| SKMZM301-07 | BOLD:AAA8775 | COI-5P | 657 | Russia | 2007-07-22 | 53.459, 122.404 | |
| SKMZM096-07 | BOLD:AAA8775 | COI-5P | 654 | Russia | 2007-05-17 | - | |
| SKMZM095-07 | BOLD:AAA8775 | COI-5P | 654 | Russia | 2007-05-17 | - | |
| RR004-12 | BOLD:AAA8775 | COI-5P | 596 | Romania | 2008-06-01 | - |
Literature
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