Phytophthora megakarya
TaxID: 4795
Basic Information
Phytophthora megakarya
Fungus
Phytophthora megakarya is an oomycete plant pathogen that causes black pod disease in cocoa trees in west and central Africa. This pathogen can cause detrimental loss of yield in the economically important cocoa industry, worth approximately $70 billion annually. It can damage any part of the tree, causing total yield losses which can easily reach 20-25%. A mixture of chemical and cultural controls, as well as choosing resistant plant varieties, are often necessary to control this pathogen.
from Wikipedia
Taxonomic Information
Eukaryota
Oomycota
Peronosporomycetes
Peronosporales
Peronosporaceae
Phytophthora
megakarya
Undefined
Species
nan
d__Eukaryota;p__Oomycota;c__Peronosporomycetes;o__Peronosporales;f__Peronosporaceae;g__Phytophthora;s__Phytophthora megakarya
nan
Fungal organisms
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (8 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_002215365.1 | Scaffold | 101 | 6 | 7 | - |
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ASM221536v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR10319695 | - | - | - | 37879805 | Ghana: Eastern | |
|
PRJNA578180 SRX7030638 SRP226495 general RNA-seq of P. megakarya Pm1 of mycelia replicate 2 Illumina TruSeq GH34 {'host': 'Theobroma cacao L.', 'isolate': 'GH34', 'env_medium': 'Cacao pod', 'geo_loc_name': 'Ghana: Eastern', 'biosamplemodel': 'MIGS.eu', 'collection_date': '2013', 'isol_growth_condt': 'https://doi.org/10.1111/ppa.12496'} |
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| SRR10319694 | - | - | - | 39744600 | Ghana: Eastern | |
|
PRJNA578180 SRX7030639 SRP226495 general RNA-seq of P. megakarya Pm1 of mycelia replicate 3 Illumina TruSeq GH34 {'host': 'Theobroma cacao L.', 'isolate': 'GH34', 'env_medium': 'Cacao pod', 'geo_loc_name': 'Ghana: Eastern', 'biosamplemodel': 'MIGS.eu', 'collection_date': '2013', 'isol_growth_condt': 'https://doi.org/10.1111/ppa.12496'} |
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| SRR10319693 | - | - | - | 25876094 | Ghana: Eastern | |
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PRJNA578180 SRX7030640 SRP226495 general RNA-seq of P. megakarya Pm1 of mycelia replicate 4 Illumina TruSeq GH34 {'host': 'Theobroma cacao L.', 'isolate': 'GH34', 'env_medium': 'Cacao pod', 'geo_loc_name': 'Ghana: Eastern', 'biosamplemodel': 'MIGS.eu', 'collection_date': '2013', 'isol_growth_condt': 'https://doi.org/10.1111/ppa.12496'} |
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Literature
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