Pseudomonas corrugata
TaxID: 47879
Basic Information
Pseudomonas corrugata
Pith Necrosis of Tomato
Pseudomonas corrugata is a Gram-negative, plant-pathogenic bacterium that causes pith necrosis in tomatoes. Based on 16S rRNA analysis, P. corrugata has been placed in the P. fluorescens group. For a more comprehensive phylogenetic analysis of P. corrugata and its closely related phytopathogenic bacterium P. mediterranea, refer to Trantas et al. 2015.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
corrugata
Unclassified
Species
nan
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas corrugata
nan
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (6 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (2 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_001708425.1 | Complete Genome | 6 | 6124 | 6124 | - |
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ASM170842v1 |
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| GCF_001269905.1 | Contig | 6 | 374 | 374 | - |
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ASM126990v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR6448357 | - | - | - | 20575900 | - | |
|
PRJNA420956 SRX3539328 SRP128274 RNA-seq of P. corrugata: Wt Libraries were prepared for sequencing according to the manufacturer s instructions (Illumina). CFBP5454 {'host': 'Tomato', 'strain': 'CFBP5454', 'sample_type': 'Genomic DNA', 'geo_loc_name': 'Italy: Sicily', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '1994'} |
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| SRR6448356 | - | - | - | 8600718 | - | |
|
PRJNA420956 SRX3539329 SRP128274 RNA-seq of P. corrugata: Wt Libraries were prepared for sequencing according to the manufacturer s instructions (Illumina). CFBP5454 {'host': 'Tomato', 'strain': 'CFBP5454', 'sample_type': 'Genomic DNA', 'geo_loc_name': 'Italy: Sicily', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '1994'} |
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| SRR6448355 | - | - | - | 14817696 | - | |
|
PRJNA420956 SRX3539330 SRP128274 RNA-seq of P. corrugata: Wt Libraries were prepared for sequencing according to the manufacturer s instructions (Illumina). CFBP5454 {'host': 'Tomato', 'strain': 'CFBP5454', 'sample_type': 'Genomic DNA', 'geo_loc_name': 'Italy: Sicily', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '1994'} |
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Literature
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