Pratylenchus crenatus

TaxID: 45934

Basic Information

Scientific Name *

Common Name

Root Lesion Nematode

Introduction

Pratylenchus crenatus is a plant pathogenic nematode infecting potatoes.

from Wikipedia

Taxonomic Information

Domain/Kingdom

Eukaryota

Phylum

Nematoda

Class

Chromadorea

Order

Rhabditida

Family

Pratylenchidae

Genus

Pratylenchus

Species

crenatus

Subspecies

-

Photos (0 photos)

No photos available.

Morphological Features

No morphological description available.

Host Plants (0 host plants)

Data sources: EPPO Global Database and relevant literature.

No host plants available.

Quarantine Status (6 records)

Data sources: IPPC website and national quarantine websites; verified by human review.

Country	Status	Year Added
Argentina	Absent	2019
Ecuador	Quarantine pests	—
Republic of Korea	Quarantine pests	—
Peru	Absent	—
Paraguay	Quarantine pests	—
Uruguay	Absent	—

Distribution (7 countries)

Data Sources: EPPO Global Database and GBIF.

7

Present

0

Absent

0

Unknown/Other

Country	Status	State
Australia	Present	—
Germany	Present	—
Finland	Present	—
United Kingdom	Present	—
Ireland	Present	—
Sweden	Present	—
South Africa	Present	—

Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Download CSV

Genomes (1 records)

Data source: NCBI.

Assembly Accession	Assembly Level	Genome Size(Mb)	Contig N50(Kb)	Scaffold N50(Kb)	BUSCO%	Downloads	Actions
GCA_051311395.1	Scaffold	119	332	385	-	FASTA
Assembly Name AAFC_Pcre_CAN_QC_01

Transcriptomes (3 records)

Data source: NCBI.

Run ID	Tissue	Developmental Stage	Sex	Read Count	Location	Actions
SRR28607745	J3	-	-	16425235	Canada: Quebec	Download NCBI
BioProject PRJNA1098593 Experiment ID SRX24206199 Study ID SRP500693 Category general Title Comparative genomics analysis of root-lesion nematode P. crenatus Design Description RNA extracted from larvae Strain 4 Sample Attributes {'host': 'tomato', 'breed': 'Pcre_CAN_QC', 'tissue': 'J3', 'isolate': '4', 'geo_loc_name': 'Canada: Quebec', 'biosamplemodel': 'Invertebrate'}
SRR28607744	J4	-	-	15672768	Canada: Quebec	Download NCBI
BioProject PRJNA1098593 Experiment ID SRX24206200 Study ID SRP500693 Category general Title Comparative genomics analysis of root-lesion nematode P. crenatus Design Description RNA extracted from larvae Strain 5 Sample Attributes {'host': 'tomato', 'breed': 'Pcre_CAN_QC', 'tissue': 'J4', 'isolate': '5', 'geo_loc_name': 'Canada: Quebec', 'biosamplemodel': 'Invertebrate'}
SRR28607742	Adults	-	-	44276686	Canada: Quebec	Download NCBI
BioProject PRJNA1098593 Experiment ID SRX24206202 Study ID SRP500693 Category general Title Comparative genomics analysis of root-lesion nematode P. crenatus Design Description RNA extracted from larvae Strain 7 Sample Attributes {'host': 'tomato', 'breed': 'Pcre_CAN_QC', 'tissue': 'Adults', 'isolate': '7', 'geo_loc_name': 'Canada: Quebec', 'biosamplemodel': 'Invertebrate'}

DNA Barcodes (38 records)

View all

Data source: BOLD.

Process ID	BIN	Marker	Length	Country	Date	Lat/Lon	Sequence
GBNEM7764-23	-	18S-5P	703	Czechia	-	-	--TGCTTGTCTCAAAGATTAAGCCATGCATGTATAAGTATAAA-----CGAT-TTAATCGTGAAACCGCGAACGGCTCATTATA-ACAGCTATAATTTACTTGATCTTGAC-------TT-CCTACTTGGATAA-CTGTGGTA-ATTCTAGAG-CTAATACATGCACC-AAAGCTCCGACCTTACGG-GAAGA-------------------------------GCGCATTTA-TT---CGAACAAAACCAAGC----------------------------------------------------------GG--CTTCG----GCCGTCCGCAGTTGACTCAGAATAAC--TA-AGCTGAT--CGCATGGTCTTG-AACCGGCGACGTGT-CTTTCAAGT-ATCTGCCTTATCAACTTTCGATGGTAGTGT-ATCTGACTACCATGG-TGGTGACGGGTAACGGAGGATA-AGGGTTCGACTCCG-GAG-----AAGG--GG-CCTGAGAA----ATGGCCACTACG-TCTAAGGATGGC-----AGCA-GGCGCGCAAATTACCCACTCTCAGAA-----TGA--GGAGGTAGTGACGAGAAATAACGAGACCGTTCTC--TACG-A-GGCC----GGTCATCGGAATGGGTACAA--------------TTTAAAC-CCTTTAAC-GAGTATCTATGAGAGGGC-AAGTCTGGTGC------CAGCA--GCCGCGGTAATTCCA---GCTCTCAAAATGCATAGAA--TTATTGCTGCG---GTTAAAA-AGCTCGTAGTTGGATCTGTGCCGGTGGACCCGGTCCACTCGAAAGGGTGCGTACTGGGCTCCTCGGC--TT----TC---------------------------------T----G--CCGGTTTTCCCA----------T-------------C--------GTGGCCTTAACTGGTTGCGGT-GG
GBNEM7763-23	-	18S-5P	691	Czechia	-	-	--------------AGATTAAGCCAGGCATGTATAAGTATAGA-----CGAT-TTTATCGTGAAACCGCGAACGGCTCATTATA-ACAGCTATAATTTACTTGATCTTGAC-------TT-CCTACTTGGATAA-CTGTGGTA-ATTCTAGAG-CTAATACATGCACC-AAAGCTCCGACCTTACGG-GAAGA-------------------------------GCGCATTTA-TT---CGAACAAAACCAAGC----------------------------------------------------------GG--CTTCG----GCCGTTCACAGTTGACTCAGAATAAC--TA-AGCTGAT--CGCATGGTCTTG-AACCGGCGACGTGT-CTTTCAAGT-ATCTGCCTTATCAACTTTCGATGGTAGTGT-ATCTGACTACCATGG-TGGTGACGGGTAACGGAGGATA-AGGGTTCGACTCCG-GAG-----AAGG--GG-CCTGAGAA----ATGGCCACTACG-TCTAAGGATGGC-----AGCA-GGCGCGCAAATTACCCACTCTCAGAA-----TGA--GGAGGTAGTGACGAGAAATAACGAGACCGTTCTC--TACG-A-GGCC----GGTCATCGGAATGGGTACAA--------------TTTAAAC-CCTTTAAC-GAGTATCTATGAGAGGGC-AAGTCTGGTGC------CAGCA--GCCGCGGTAATTCCA---GCTCTCAAAATGCATAGAA--TTATTGCTGCG---GTTAAAA-AGCTCGTAGTTGGATCTGTGCCGATGGACCCGGTCCACTCGCAAGGGTGCGCACTGGGCTCCTTGGC--TT----TC---------------------------------T----G--CTGGTTTTCCCG----------T-------------C--------GTGGCCTTAACTGGTTGCGGC-GG
GBNEM7762-23	-	18S-5P	709	Czechia	-	-	TCATGCTTGTCTCAAAGATTAAGCCATGCATGTATAAGTATTAA-----CGATTTTAATCGTGAAACCGCGAACGGCTCATTATA-ACAGCTATAATTTMCTTGATCTTGRCAAT-------CCTACTTGGATAA-CTGTGGTA-ATTCTAGAG-YTAAKACATGCACCAAAGCTCTGACCTTGCAGAAGGGAA-------------------------------GA-G-----TGCATTTATTATTTGAAAAC----C------------------------------------------------------AAGCGGCTTCGGTCGTTTTT--TGTTGACTCAGAATAAC--TA-AGCTGAT--CGCATGGTCY-TGTACCGGCGACGTGT-CTTTCAAGT-ATCTGCCTTATCAACTTTCGATGGTAGTGT-ATCTGACTACCATGG-TGGTGACGGGTAACGGAGGATA-AGGGTTCGACTCCG-SAG-----AAGG--GG-CCTGAGAA----ATGGCCACTACG-TGTAAGGATGGC-----AGCA-GGCGCGCAAATTACCCACTCTCAGAGCAT--TGA--GGAGGTAGTGACGAAAAATACCGAGGCCGTTCT---TTA-CGAGGCC----GGTCATCGGAATGGGTACAA--------------TYTAAACCCTTTAAC--GAGTATCTATGAGAGGGC-AAGTCTGGTGC------CAGCA-GCCGCGGTAATTCCAG----CTCTCAAAATGCATAGAA--TTATTGCTGCG---GTTAAAA-AGCTCGTAGTTGGATCTGTGCCAGGGAGTCGGTCGCACTTTCGAGTGCGTACTG---GCTAACCCAGGCTTTG--TT---------------------------------T----G----CCGGTT--TTCTC------CT-------------C--------GTCGGTCTTCACCGACTGCGGGG
GBNEM7761-23	-	18S-5P	586	United Kingdom	-	-	TCTAGAGCTAATACATGCAGCAGAACTCGGACCTTCGGG-G--------------------------------------------------------------------ACGAGTGCTT-TTATTAGACCAAGACCAATCGGGCTTCG--------------------------------------------------------------------------GCCCGAC-ACTT--GTGGCGACTCTGGATAACTTTGG---GCTGATCGC-A-CGATCTCGT--ATCGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGTTTCTT-TCAAGTGTCTGCCTTATCAACTT-TCGATGGTAG-GTTATGCGCCTACCATGGTCGTAACGGGTGAC-GGGGAATCAGGGTTCGATTCCGGAGAGGGA-GCCTG--AGAAACGGCT-----ACCACATCCAAGGAAGGC-AGCAGGC--GCGCAAATTACCCACTCCCGG-CACGGGG------------AGGTAGTGACGAAAAATAA--CAATACGGGACT----CT-TTTGAGGCCCCGTAATTGGAATGAGTACACTCTAAA-TCCTT-TAA---CGAGGATCCATT-GGAGGGCAAGTC-----TGGTG-CCAGCAGCCGCGGTAA-TTCCAGCTC--CAATAGCG-----TATATTAA-AGTT--GTTGC-GGTT----AAAAGCTC-GT-AGTTGGA---TCTCAGTTCGAGGCTGGCGGTCCACCGTTCGGTGGCTACTGCCTAG--CGCTCA-------------------------------------AC-ATCCTGC-------------CGG-------TTTTC---------------CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTGCTCTT-CATTG-AGTG-----TCTCGGGT
GBNEM7760-23	-	18S-5P	299	Unrecoverable	-	-	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGTGACGAAAAATAACGATACGGGACT---CATCC-GAGGCCCCGTAATCGGAATGAGTACACTTTAAATCCTTTAACG-AGGATCCATTGGAG--GGC----AAGT-CTGGTGCCAG--CA--GCCGCGGTAATTCCAGC-TCCAATAGCGTATATTAAA--GTTGTTGCGGTTAA-AAAGCTCGTAGTTGAATCTGTGTGTCACGATGCTGGTTCACCGCTCGC-GGTGTTTAACTAGC-ATGCAGT--GAGACGTCCTACC-GGTGGGCTTAGCTCTTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------CGGGGCGGTCCAACTAATATCCCATCGCGG-TGCTC--T-TCA
GBNEM7759-23	-	18S-5P	709	Unrecoverable	-	-	AGTTATGGTTCCTTAGATCGTACAA-------------------T--CCTACTTGGATAACTGTAGTAATTC-TAGAGCTAATACATGCAACCAAGCTCCGACCTTTTT-GG----------------------------------------GGAAGAGCGCTTTTATTAGATCAAAGCCAATC-A-GCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA--AGGGCTGTCCCATTGG--TGACTCTGG-ATAACTTTG-----T--GCTGATCGCA----TGGCC-TCGAGCCGGCGACG-TATCTTTCA-AATGTCTGCCCTATCAACT-TTCGACGGTAAGTGATATGCT-TACCGTG-GTTGTAA--CGGGTAACGGGGAATTAGGGTTCGATTCC--G-GAGAGGGAG-CATGAGA-AACGG--------CTACCACA-TCCAAG---GAAGGCAGCAGG-CGCG-------C-AAATTACCCACTCCTGGC--A-C-------GGGGAGGT--AGTGACGAAAAATAA--CAA--TA-C---GGGACTCTTTCGAG-GCCCCG-T-AATTGGAAT-GAGTAC---ACTTTAAATCCTTTAACGAGGATCTATTGGAGGGC-AAGTC--TGGTGCCAG-CAGCCGC--------------GGTAAT------------------------------------TCCAGCTCC----AATAGCGTATATT--AAAGTT-GTTGCAGTT-----AAAAAGCTCGTAGTTGGATCTCAGGTCCAGGCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGT-----CC---ACCTC--GC-G------GTGGTTACTGCTCGTCCTGACCTACC------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CCCAGTT--TTCCCTTGGTGCTCTT-----------------------------------------------------------GAT-TGAGTGTC-TCGGGTGGCTGGAACGTTTACTTTGAA---AAAATT--AGAGTGTTCAAAGCAGGCAG-------------TTCGCCTG-AATAAT--GGTGCA-TGG-A
GBNEM7758-23	-	18S-5P	503	Japan	-	-	------------------------GTGCAAGCCGTACGCGTTC-GCGC-----GTCTAGGTGAAACCGCGAA-AGGCTCATTA---AATCAGTTATGGTTCCTTGGATCGTAC--------------------CCATCCCTTTACTTGGATAA-CTGTGGTAATTCTAGAGCTAATACATGCCGACAGAGTTCCGACCGCCTCGC--------------------------------------------------------G---CGGGAGGAACGCTTTTATTAGATCAAAACCCATCGGCA---------------------------------------------------------------------------CGCGA-CCAAGTGG------TGACTCTGAATAACT---TTGTGCTGATCGCACGGTCTC-AGCGCTGGCGATGCATCTT-TCAAATGTCTGCCTTAT-CAACTGTCGATGGTAGGTTA-TGCGCCTACCATGGTG-----GT-AACGGGTGACGGGG---GATCAGGGTTCGA--TCCCGGAGA---G-GGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCACG----CAAATTAC-CCACTCCCAGCTCAGGGGAGGTA--GTGACGAAATATAACGATACGGGACTCATCCG--A-GGCCTCGTAAT--CGGAATGAGTACACTTTAAAAC--------GTTTA-ACGAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GBNEM7757-23	-	18S-5P	503	Japan	-	-	------------------------GTGCAAGCCGTACGCGTTC-GCGC-----GTCTAGGTGAAACCGCGAA-AGGCTCATTA---AATCAGTTATGGTTCCTTGGATCGTAC--------------------CCATCCCTTTACTTGGATAA-CTGTGGTAATTCTAGAGCTAATACATGCCGACAGAGTTCCGACCGCCTCGC--------------------------------------------------------G---CGGGAGGAACGCTTTTATTAGATCAAAACCCATCGGCA---------------------------------------------------------------------------CGCGA-CCAAGTGG------TGACTCTGAATAACT---TTGTGCTGATCGCACGGTCTC-AGCGCTGGCGATGCATCTT-TCAAATGTCTGCCTTAT-CAACTGTCGATGGTAGGTTA-TGCGCCTACCATGGTG-----GT-AACGGGTGACGGGG---GATCAGGGTTCGA--TCCCGGAGA---G-GGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCACG----CAAATTAC-CCACTCCCAGCTCAGGGGAGGTA--GTGACGAAATATAACGATACGGGACTCATCCG--A-GGCCTCGTAAT--CGGAATGAGTACACTTTAAAAC--------GTTTA-ACGAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GBNEM7756-23	-	18S-5P	500	Japan	-	-	------------------------GTGCAAGCCGTACGCGTTC-GCGC-----GTCTAGGTGAAACCGCGAA-AGGCTCATTA---AATCAGTTATGGTTCCTTGGATCGTAC--------------------CA-TCCCTTTACTTGGATAA-CTGTGGTAATTCTAGAGCTAATACATGCCGACAGAGTTCCGACCGCCTCGC--------------------------------------------------------G---CGGGAGGAACGCTTTTATTAGATCAAAACCCATCGGC-----------------------------------------------------------------------------ACGA-CCAAGTGG------TGACTCTGAATAACT---TTGTGCTGATCGCACGGTCTC-AGCGCTGGCGATGCATCTT-TCAAATGTCTGCCTTAT-CAACTGTCGATGGTAGGTTA-TGCGCCTACCATGGTG-----GT-AACGGGTGACGGGG---GATCAGGGTTCGA--TCCCGGAGA---G-GGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCACG----CAAATTAC-CCACTCCCAGCTCAGGGGAGGTA--GTGACGAAATATAACGATACGGGACTCATCCG--A-GGCCTCGTAAT--CGGAATGAGTACACTTTAAAAC--------GTTTA-ACGAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GBNEM7755-23	-	18S-5P	550	Japan	-	-	-----TTGTCTCAAAGATTAAGCCATGCATGTCTCAGTACAAG-CCAA-----ATTAAGGTGAAACCGCGAA-AGGCTCATTA---AATCAGTTATGGTTCCTTAGATCGTAC---------------------CA-CAATTACTTGGATAAC--TGTGGTAATTCTAGAGCTAATACATGCAAACAGAGTCCCG-ACCGGAGACG---------------------------------------------------------GAA----GGGACGCTTTTATTAGATCAAAACCAATCGGTGACGGGTTTCG-------------------------------------------------------GCTCGT--CATCGTA-CAACTTGG------TGACTCTGAATAACTT----TATGCTGATCGCACGGTCTT-GCACCGGCGACGCATCTT-TCAAATGTCTGCCTTATC-AACTGTCGATGGTAGGTTC-TGCGCCTACCATGGTT-----GT-AACGGGTAACGGGG---AATCAGGGTTCGA--TTCCGGAGA---G-GGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCG----CAAATTAC-CCACTCCCAGCACG-GGGAGGTA--GTGACGAAAAATAACGATACGGGACTCATCCGAGG-CCCCGTAAT----CGGAATGAGTACACTCTAAATC--------CTTTA-ACGAGGATCAATTGG-AGGGCAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Page 1 of 4

Pratylenchus crenatus

Basic Information

Taxonomic Information

Photos (0 photos)

Morphological Features

Host Plants (0 host plants)

Quarantine Status (6 records)

Distribution (7 countries)

Distribution Map (Latitude and longitude coordinates sourced from GBIF.)

Genomes (1 records)

Transcriptomes (3 records)

DNA Barcodes (38 records)

Literature

State Information