Raphanus raphanistrum
TaxID: 109996
Basic Information
Raphanus raphanistrum
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Raphanus raphanistrum, also known as wild radish, white charlock or jointed charlock, is a flowering plant in the family Brassicaceae. The species is native to western Asia, Europe and parts of Northern Africa. It has been introduced into most parts of the world and is regarded as a habitat threatening invasive species in many areas, for example, Australia. It spreads rapidly and is often found growing on roadsides or in other places where the ground has been disturbed. The cultivated radish, widely used as a root vegetable, is sometimes considered to be one of its subspecies as Raphanus raphanistrum subsp. sativus.
from Wikipedia
Taxonomic Information
Eukaryota
Streptophyta
Magnoliopsida
Brassicales
Brassicaceae
Raphanus
Raphanus raphanistrum
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Species
k__Eukaryota;p__Streptophyta;c__Magnoliopsida;o__Brassicales;f__Brassicaceae;g__Raphanus;s__Raphanus raphanistrum
Weeds
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (3 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_029531685.1 | Chromosome | 532 | 237 | 55007 | - |
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APGP_CSIRO_Rrap_0.1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR38669447 | Leaf | adult plant stage | - | 34407286 | Italy:Campania, San Giorgio a Cremano | |
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PRJNA1467222 SRX33475218 SRP701284 weed RNA-Seq of Raphanus raphanistrum: Rr_RG17 The library preparations were sequenced on an Illumina NovaSeq X Plus platform Rr_RG17 {'tissue': 'Leaf', 'isolate': 'Rr_RG17', 'dev_stage': 'adult plant stage', 'population': 'SGIO', 'geo_loc_name': 'Italy:Campania, San Giorgio a Cremano', 'biosamplemodel': 'Plant', 'collection_date': '2023'} |
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| ERR17338173 | - | - | hermaphrodite and monoecious | 42516714 | N/A | |
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PRJEB113113 ERX16727697 ERP193523 weed Illumina NovaSeq 6000 paired end sequencing Illumina sequencing of sample accession SAMEA110451365 for study accession PRJEB113113. This submission includes reads tagged with the sequence CATCATTT. {'gal': 'Royal Botanic Gardens Kew', 'sex': 'hermaphrodite and monoecious', 'tolid': 'ddRapRaph1', 'habitat': 'coastal cliff', 'elevation': '60', 'lifestage': 'vegetative structure', 'broker name': 'COPO', 'external id': 'SAMEA110451365', 'sample name': '62c6ff4686eb2e0eb5ebf4e1', 'specimen_id': 'KDTOL10522', 'collected_by': 'Maarten Christenhusz', 'insdc status': 'public', 'project name': 'DTOL', 'submitter id': '62c6ff4686eb2e0eb5ebf4e1', 'gal_sample_id': 'KDTOL10522', 'identified_by': 'Maarten Christenhusz', 'organism part': 'LEAF', 'collection date': '2022-06-15', 'ena-last-update': '2022-08-01T16:48:17Z', 'scientific_name': 'Raphanus raphanistrum', 'barcoding center': 'ROYAL BOTANIC GARDEN EDINBURGH', 'ena-first-public': '2022-08-01T16:48:17Z', 'specimen_voucher': 'K001400991', 'insdc center name': 'EarlhamInstitute', 'insdc last update': '2022-08-01T16:48:17Z', 'insdc first public': '2022-08-01T16:48:17Z', 'sample derived from': 'SAMEA110450275', 'collecting institution': 'Independent | Volunteer', 'identifier_affiliation': 'Independent', 'original collection date': '2022-06-15', 'original collection location': 'United Kingdom | Cornwall | Kynance Cove', 'geographic location (latitude)': '49.9753', 'geographic location (longitude)': '-5.2252', 'geographic location (country and/or sea)': 'United Kingdom', 'geographic location (region and locality)': 'Cornwall | Kynance Cove'} |
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| ERR17338174 | - | - | hermaphrodite and monoecious | 35381811 | N/A | |
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PRJEB113113 ERX16727698 ERP193523 weed Illumina NovaSeq 6000 paired end sequencing Illumina sequencing of sample accession SAMEA110451365 for study accession PRJEB113113. This submission includes reads tagged with the sequence GTGCAGGG. {'gal': 'Royal Botanic Gardens Kew', 'sex': 'hermaphrodite and monoecious', 'tolid': 'ddRapRaph1', 'habitat': 'coastal cliff', 'elevation': '60', 'lifestage': 'vegetative structure', 'broker name': 'COPO', 'external id': 'SAMEA110451365', 'sample name': '62c6ff4686eb2e0eb5ebf4e1', 'specimen_id': 'KDTOL10522', 'collected_by': 'Maarten Christenhusz', 'insdc status': 'public', 'project name': 'DTOL', 'submitter id': '62c6ff4686eb2e0eb5ebf4e1', 'gal_sample_id': 'KDTOL10522', 'identified_by': 'Maarten Christenhusz', 'organism part': 'LEAF', 'collection date': '2022-06-15', 'ena-last-update': '2022-08-01T16:48:17Z', 'scientific_name': 'Raphanus raphanistrum', 'barcoding center': 'ROYAL BOTANIC GARDEN EDINBURGH', 'ena-first-public': '2022-08-01T16:48:17Z', 'specimen_voucher': 'K001400991', 'insdc center name': 'EarlhamInstitute', 'insdc last update': '2022-08-01T16:48:17Z', 'insdc first public': '2022-08-01T16:48:17Z', 'sample derived from': 'SAMEA110450275', 'collecting institution': 'Independent | Volunteer', 'identifier_affiliation': 'Independent', 'original collection date': '2022-06-15', 'original collection location': 'United Kingdom | Cornwall | Kynance Cove', 'geographic location (latitude)': '49.9753', 'geographic location (longitude)': '-5.2252', 'geographic location (country and/or sea)': 'United Kingdom', 'geographic location (region and locality)': 'Cornwall | Kynance Cove'} |
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Literature
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