Ganoderma boninense
TaxID: 34458
Basic Information
Ganoderma boninense
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Ganoderma orbiforme – most commonly known as G. boninense or just Ganoderma in oil palm pathology – is a species of polypore fungus that is widespread across southeast Asia. It is a plant pathogen that causes basal stem rot, a disease of the African oil palm (Elaeis guineensis). The fungus was first described scientifically in 1838 by Elias Magnus Fries from collections made in Guinea. Leif Ryvarden transferred it to the genus Ganoderma in 2000. In addition to its type locality, the fungus has also been collected from the Bonin Islands in the Pacific, and from Venezuela and Puerto Rico.
from Wikipedia
Taxonomic Information
Eukaryota
Basidiomycota
Agaricomycetes
Polyporales
Polyporaceae
Ganoderma
Ganoderma boninense
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Species
k__Eukaryota;p__Basidiomycota;c__Agaricomycetes;o__Polyporales;f__Polyporaceae;g__Ganoderma;s__Ganoderma boninense
Fungal organisms
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (2 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_001855635.1 | Contig | 60 | 6 | 6 | - |
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ASM185563v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR22875245 | - | - | - | 28611407 | Malaysia: Perak | |
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PRJNA912356 SRX18833795 SRP413159 fungi PER71 starved of carbon and nitrogen sources (Treatment Day 2 replicate 2) Sample is ground in the lysis buffer and mRNA is isolated from this using oligo dT beads. The mRNA is used to make first and second strands of cDNA and the double stranded cDNA molecules are subsequently enzymatically fragmented. The ends of these molecules are repaired and an A nucleotide is added to facilitate TA ligation of the barcoded adapters. The ligated samples are then enriched by amplification using adapter specific primers and purified for sequencing on the Hiseq 4000 platform. PER71 {'elev': '4 m', 'depth': '0', 'isolate': 'PER71', 'lat_lon': '4.0224 N 101.0206 E', 'env_medium': 'plantation soil', 'geo_loc_name': 'Malaysia: Perak', 'biosamplemodel': 'MISAG.microbial', 'collection_date': '2017-02', 'env_broad_scale': 'oil palm biome', 'env_local_scale': 'plantation', 'isolation_source': 'fruiting body'} |
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| SRR22875244 | - | - | - | 28702113 | Malaysia: Perak | |
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PRJNA912356 SRX18833796 SRP413159 fungi PER71 starved of carbon and nitrogen sources (Treatment Day 2 replicate 3) Sample is ground in the lysis buffer and mRNA is isolated from this using oligo dT beads. The mRNA is used to make first and second strands of cDNA and the double stranded cDNA molecules are subsequently enzymatically fragmented. The ends of these molecules are repaired and an A nucleotide is added to facilitate TA ligation of the barcoded adapters. The ligated samples are then enriched by amplification using adapter specific primers and purified for sequencing on the Hiseq 4000 platform. PER71 {'elev': '4 m', 'depth': '0', 'isolate': 'PER71', 'lat_lon': '4.0224 N 101.0206 E', 'env_medium': 'plantation soil', 'geo_loc_name': 'Malaysia: Perak', 'biosamplemodel': 'MISAG.microbial', 'collection_date': '2017-02', 'env_broad_scale': 'oil palm biome', 'env_local_scale': 'plantation', 'isolation_source': 'fruiting body'} |
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| SRR22875243 | - | - | - | 29378508 | Malaysia: Perak | |
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PRJNA912356 SRX18833797 SRP413159 fungi PER71 starved of carbon and nitrogen sources (Control Day 4 replicate 1) Sample is ground in the lysis buffer and mRNA is isolated from this using oligo dT beads. The mRNA is used to make first and second strands of cDNA and the double stranded cDNA molecules are subsequently enzymatically fragmented. The ends of these molecules are repaired and an A nucleotide is added to facilitate TA ligation of the barcoded adapters. The ligated samples are then enriched by amplification using adapter specific primers and purified for sequencing on the Hiseq 4000 platform. PER71 {'elev': '4 m', 'depth': '0', 'isolate': 'PER71', 'lat_lon': '4.0224 N 101.0206 E', 'env_medium': 'plantation soil', 'geo_loc_name': 'Malaysia: Perak', 'biosamplemodel': 'MISAG.microbial', 'collection_date': '2017-02', 'env_broad_scale': 'oil palm biome', 'env_local_scale': 'plantation', 'isolation_source': 'fruiting body'} |
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Literature
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