Pseudomonas marginalis
TaxID: 298
Basic Information
Pseudomonas marginalis
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Pseudomonas marginalis is a soil bacterium that can cause soft rots of plant tissues. It infects poinsettia, lettuce, and crucifers (canola, mustard). Based on 16S rRNA analysis, P. marginalis has been placed in the P. fluorescens group.
from Wikipedia
Taxonomic Information
Bacteria
Pseudomonadota
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
Pseudomonas marginalis
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Species
k__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas marginalis
Prokaryotes
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (6 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Angola | Quarantine pests | — |
| Mexico | Quarantine pests | — |
| Sudan | Quarantine pests | — |
| Sao Tome and Principe | Quarantine pests | — |
| Seychelles | Quarantine pests | — |
| United States of America | Quarantine pests | — |
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCF_000967935.1 | Scaffold | 6 | 143 | 241 | - |
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ASM96793v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR38044177 | - | - | - | 9634533 | Germany: Martinsried | |
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PRJNA1451809 SRX32895379 SRP690887 prokaryote RAN Seq of gacS_B9 Total RNA was extracted from Pseudomonas Qb1D2 gacS mutant cell cultures. Ribosomal RNA was depleted and cDNA libraries were prepared for single-end RNA sequencing. Qb1D2_B9 {'host': 'Lotus burttii', 'strain': 'Qb1D2_B9', 'sample_type': 'cell culture', 'geo_loc_name': 'Germany: Martinsried', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2019-09-21'} |
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| SRR38044176 | - | - | - | 9771146 | Germany: Martinsried | |
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PRJNA1451809 SRX32895380 SRP690887 prokaryote RAN Seq of gacS_B10 Total RNA was extracted from Pseudomonas Qb1D2 gacS mutant cell cultures. Ribosomal RNA was depleted and cDNA libraries were prepared for single-end RNA sequencing. Qb1D2_B10 {'host': 'Lotus burttii', 'strain': 'Qb1D2_B10', 'sample_type': 'cell culture', 'geo_loc_name': 'Germany: Martinsried', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2019-09-21'} |
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| SRR38044175 | - | - | - | 10893514 | Germany: Martinsried | |
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PRJNA1451809 SRX32895381 SRP690887 prokaryote RAN Seq of gacS_B11 Total RNA was extracted from Pseudomonas Qb1D2 gacS mutant cell cultures. Ribosomal RNA was depleted and cDNA libraries were prepared for single-end RNA sequencing. Qb1D2_B11 {'host': 'Lotus burttii', 'strain': 'Qb1D2_B11', 'sample_type': 'cell culture', 'geo_loc_name': 'Germany: Martinsried', 'biosamplemodel': 'Microbe, viral or environmental', 'collection_date': '2019-09-21'} |
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Literature
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