Epicoccum nigrum
TaxID: 105696
Basic Information
Epicoccum nigrum
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Epicoccum nigrum is a species of fungus in the phylum Ascomycota. A plant pathogen and endophyte, it is a widespread fungus which produces coloured pigments that can be used as antifungal agents against other pathogenic fungi. The fluorescent stain epicocconone is extracted from it.
from Wikipedia
Taxonomic Information
Eukaryota
Ascomycota
Dothideomycetes
Pleosporales
Didymellaceae
Epicoccum
Epicoccum nigrum
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Species
k__Eukaryota;p__Ascomycota;c__Dothideomycetes;o__Pleosporales;f__Didymellaceae;g__Epicoccum;s__Epicoccum nigrum
Fungal organisms
Photos (0 photos)
No photos available.
Morphological Features
No morphological description available.
Host Plants (0 host plants)
Data sources: EPPO Global Database and relevant literature.
No host plants available.
Quarantine Status (1 records)
Data sources: IPPC website and national quarantine websites; verified by human review.
| Country | Status | Year Added |
|---|---|---|
| Guatemala | Absent | — |
Distribution (0 countries)
Data Sources: EPPO Global Database and GBIF.
No distribution records available.
Genomes (1 records)
Data source: NCBI.
| Assembly Accession | Assembly Level | Genome Size(Mb) | Contig N50(Kb) | Scaffold N50(Kb) | BUSCO% | Downloads | Actions |
|---|---|---|---|---|---|---|---|
| GCA_002116315.1 | Scaffold | 34 | 165 | 1370 | - |
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ASM211631v1 |
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Transcriptomes (3 records)
Data source: NCBI.
| Run ID | Tissue | Developmental Stage | Sex | Read Count | Location | Actions |
|---|---|---|---|---|---|---|
| SRR10231874 | - | - | - | 45300325 | missing | |
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PRJNA571088 SRX6951173 SRP224378 fungi Epicoccum nigrum cont 1108929 Transcriptome cont 1108929 {'strain': 'cont 1108929', 'biosamplemodel': 'MIGS.eu'} |
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| SRR7977735 | - | - | - | 41899710 | Brazil | |
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PRJNA77841 SRX4810510 SRP164415 fungi 712F3 F3 P16 {'host': 'Saccharum officinarum', 'ploidy': 'diploid', 'strain': 'P16', 'lat_lon': '22.7107784 S 48.0747685 W', 'env_biome': 'agricultural field', 'env_feature': 'agricultural field', 'propagation': 'asexual/sexual', 'env_material': 'plant leaf', 'geo_loc_name': 'Brazil', 'num_replicons': '670', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'estimated_size': '37.3Mb', 'collection_date': '2009', 'isol_growth_condt': '22675473'} |
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| SRR7977734 | - | - | - | 51815494 | Brazil | |
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PRJNA77841 SRX4810511 SRP164415 fungi 712F5 F5 P16 {'host': 'Saccharum officinarum', 'ploidy': 'diploid', 'strain': 'P16', 'lat_lon': '22.7107784 S 48.0747685 W', 'env_biome': 'agricultural field', 'env_feature': 'agricultural field', 'propagation': 'asexual/sexual', 'env_material': 'plant leaf', 'geo_loc_name': 'Brazil', 'num_replicons': '670', 'biosamplemodel': 'MIGS/MIMS/MIMARKS.plant-associated', 'estimated_size': '37.3Mb', 'collection_date': '2009', 'isol_growth_condt': '22675473'} |
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Literature
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Failed to fetch literature